Submissions from 2021
Locus-specific characterization of human endogenous retrovirus expression in prostate, breast, and colon cancers, Margaret C. Steiner, Jez L. Marston, Luis P. Iñiguez, Matthew L. Bendall, Katherine B. Chiappinelli, Douglas F. Nixon, and Keith A. Crandall
Shape of the OGTT glucose response curve: relationship with β-cell function and differences by sex, race, and BMI in adults with early type 2 diabetes treated with metformin., Kristina M Utzschneider, Naji Younes, Neda Rasouli, Joshua I Barzilay, Mary Ann Banerji, Robert M Cohen, Erica V Gonzalez, Faramarz Ismail-Beigi, Kieren J Mather, Philip Raskin, Deborah J Wexler, John M Lachin, and Steven E Kahn
The Missing Link(age): Multilevel Contributors to Service Uptake Failure Among Youths on Community Justice Supervision., Gail A Wasserman, Larkin S McReynolds, Faye S Taxman, Steven Belenko, Katherine S Elkington, Angela A Robertson, Michael L Dennis, Danica K Knight, Hannah K Knudsen, Richard Dembo, Adam Ciarleglio, and Tisha R A Wiley
Entangled Aeglidae (Decapoda, Anomura): Additional evidence for cryptic species, Bianca L. Zimmermann, Ivanice Buzatto, Sandro Santos, Federico Giri, Franco Teixeira de Mello, Keith A. Crandall, Marcos Pérez-Losada, and Marlise L. Bartholomei-Santos
Submissions from 2020
Ticagrelor Added to Aspirin in Acute Ischemic Stroke or Transient Ischemic Attack in Prevention of Disabling Stroke: A Randomized Clinical Trial., Pierre Amarenco, Hans Denison, Scott R. Evans, Anders Himmelmann, Stefan James, Mikael Knutsson, Per Ladenvall, Carlos A Molina, Yongjun Wang, and S Claiborne Johnston
A Unified ILP Framework for Core Ancestral Genome Reconstruction Problems., Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, and Max A. Alekseyev
An Observational Study of the Equivalence of Age and Duration of Diabetes to Glycemic Control Relative to the Risk of Complications in the Combined Cohorts of the DCCT/EDIC Study., Ionut Bebu, Barbara H. Braffett, David Schade, William Sivitz, John I Malone, Rodica Pop-Busui, Gayle M Lorenzi, Pearl Lee, Victoria R. Trapani, Amisha Wallia, William H Herman, and John M. Lachin
Risk Factors for First and Subsequent CVD Events in Type 1 Diabetes: The DCCT/EDIC Study., Ionut Bebu, David Schade, Barbara Braffett, Mikhail Kosiborod, Maria Lopes-Virella, Elsayed Z. Soliman, William H. Herman, David A. Bluemke, Amisha Wallia, Trevor Orchard, and John M. Lachin
HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intra-Host Viral Populations., Matthew L. Bendall, Keylie M. Gibson, Margaret C. Steiner, Uzma Rentia, Marcos Pérez-Losada, and Keith A. Crandall
Risk Factors for Diabetic Peripheral Neuropathy and Cardiovascular Autonomic Neuropathy in the Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications (DCCT/EDIC) Study., Barbara H. Braffett, Rose A. Gubitosi-Klug, James W. Albers, Eva L. Feldman, Catherine L. Martin, Neil H. White, Trevor J. Orchard, Maria Lopes-Virella, John M. Lachin, Rodica Pop-Busui, and DCCT/EDIC Study Group
Frailty Worsens Antidepressant Treatment Outcomes in Late Life Depression., Patrick J Brown, Adam Ciarleglio, Steven P Roose, Carolina Montes Garcia, Sarah Chung, Johana Alvarez, Alexandra Stein, Stephanie Gomez, and Bret R Rutherford
Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities., Karen D Davis, Nima Aghaeepour, Andrew H Ahn, Martin S Angst, David Borsook, Ashley Brenton, Michael E Burczynski, Christopher Crean, Robert Edwards, Brice Gaudilliere, Georgene W Hergenroeder, Michael J Iadarola, Smriti Iyengar, Yunyun Jiang, Jiang-Ti Kong, Sean Mackey, Carl Y Saab, Christine N Sang, Joachim Scholz, Marta Segerdahl, Irene Tracey, Christin Veasley, Jing Wang, Tor D Wager, Ajay D Wasan, and Mary Ann Pelleymounter
Efficient Multiple Imputation for Sensitivity Analysis of Recurrent Events Data With Informative Censoring, Guoqing Diao, G F. Liu, D Zeng, Y Zhang, G Golm, J F. Heyse, and J G. Ibrahim
The Adaptive designs CONSORT Extension (ACE) statement: a checklist with explanation and elaboration guideline for reporting randomised trials that use an adaptive design., Munyaradzi Dimairo, Philip Pallmann, James Wason, Susan Todd, Thomas Jaki, Steven A Julious, Adrian P Mander, Christopher J Weir, Franz Koenig, Marc K Walton, Jon P Nicholl, Elizabeth Coates, Katie Biggs, Toshimitsu Hamasaki, Michael A Proschan, John A Scott, Yuki Ando, Daniel Hind, and Douglas G Altman
Elective Labor Induction at 39 Weeks of Gestation Compared With Expectant Management: Factors Associated With Adverse Outcomes in Low-Risk Nulliparous Women., Yasser Y El-Sayed, Madeline Murguia Rice, William A Grobman, Uma M Reddy, Alan T N Tita, Robert M Silver, Gail Mallett, Kim Hill, Elizabeth A. Thom, Ronald J Wapner, Dwight J Rouse, George R Saade, John M Thorp, Suneet P Chauhan, Edward K Chien, Brian M Casey, Ronald S Gibbs, Sindhu K Srinivas, Geeta K Swamy, Hyagriv N Simhan, and George A Macones
Methodologies for pragmatic and efficient assessment of benefits and harms: Application to the SOCRATES trial., Scott R. Evans, Mikael Knutsson, Pierre Amarenco, Gregory W Albers, Philip M Bath, Hans Denison, Per Ladenvall, Jenny Jonasson, J Donald Easton, Kazuo Minematsu, Carlos A Molina, Yongjun Wang, Ks Lawrence Wong, and S Claiborne Johnston
In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response., Michimasa Fujiogi, Carlos A Camargo, James P Bernot, Robert J Freishtat, Brennan Harmon, Jonathan M Mansbach, Eduardo Castro-Nallar, Marcos Perez-Losada, and Kohei Hasegawa
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing., Keylie M Gibson, Kamwing Jair, Amanda D Castel, Matthew L Bendall, Brittany Wilbourn, Jeanne A Jordan, Keith A Crandall, and Marcos Pérez-Losada
Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing (Scientific Reports, (2020), 10, 1, (1989), 10.1038/s41598-020-58410-y), Keylie M. Gibson, Kamwing Jair, Amanda D. Castel, Matthew L. Bendall, Brittany Wilbourn, Jeanne A. Jordan, Keith A. Crandall, Marcos Pérez-Losada, Thilakavathy Subramanian, Jeffery Binkley, Rob Taylor, Nabil Rayeed, Cheryl Akridge, Stacey Purinton, Jeff Naughton, Natella Rakhmanina, Larry D’Angelo, Michael Kharfen, Angela Wood, Michael Serlin, Princy Kumar, David Parenti, Alan Greenberg, Anne Monroe, Lindsey Powers Happ, Maria Jaurretche, James Peterson, Ronald D. Wilcox, Sohail Rana, Michael A. Horberg, Ricardo Fernández, and Annick Hebou
Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses., Keylie M. Gibson, Margaret C. Steiner, Uzma Rentia, Matthew L. Bendall, Marcos Pérez-Losada, and Keith A. Crandall
Active pediatric HIV case finding in Kenya and Uganda: A look at missed opportunities along the prevention of mother-to-child transmission of HIV (PMTCT) cascade., Michelle M Gill, Eliab K Natumanya, Heather J. Hoffman, Gordon Okomo, Geoffrey Taasi, Laura Guay, and Rose Masaba
Subclinical Hearing Loss is Associated With Depressive Symptoms., Justin S. Golub, Katharine K. Brewster, Adam M. Brickman, Adam J. Ciarleglio, Ana H. Kim, José A. Luchsinger, and Bret R. Rutherford
Temporal Dynamics of Bacterial Communities in a Pilot-Scale Vermireactor Fed with Distilled Grape Marc., María Gómez-Brandón, Manuel Aira, Natielo Santana, Marcos Pérez-Losada, and Jorge Domínguez
Independent Losses of the Hypoxia-Inducible Factor (HIF) Pathway within Crustacea, Allie M. Graham, Felipe S. Barreto, and Keith Crandall
Airway microbial diversity is decreased in young children with cystic fibrosis compared to healthy controls but improved with CFTR modulation, Andrea Hahn, Aszia Burrell, Emily Ansusinha, Diane Peng, Hollis Chaney, Iman Sami, Geovanny F. Perez, Anastassios C. Koumbourlis, Robert McCarter, Robert J. Freishtat, Keith A. Crandall, and Edith T. Zemanick
Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study., Andrea Hahn, Katrine Whiteson, Trenton J Davis, Joann Phan, Iman Sami, Anastassios C Koumbourlis, Robert J Freishtat, Keith A. Crandall, and Heather D Bean
Refractive Error and Retinopathy Outcomes in Type 1 Diabetes: the DCCT/EDIC Study., Dean P Hainsworth, Xiaoyu Gao, Ionut Bebu, Arup Das, Lisa Olmos de Koo, Andrew J Barkmeier, William Tamborlane, John M. Lachin, and Lloyd Paul Aiello
Refractive Error and Retinopathy Outcomes in Type 1 Diabetes: The Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Study., Dean P Hainsworth, Xiaoyu Gao, Ionut Bebu, Arup Das, Lisa Olmos de Koo, Andrew J Barkmeier, William Tamborlane, John M. Lachin, and Lloyd Paul Aiello
Statistical Challenges in the Conduct and Management of Ongoing Clinical Trials During the COVID-19 Pandemic, Toshimitsu Hamasaki, F Bretz, F Cooner, L M. LaVange, and M Posch
A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala), JENS T. HØEG, CHRISTOPH NOEVER, DAVID J. REES, KEITH A. CRANDALL, and HENRIK GLENNER
Development of New Antimicrobials for Urogenital Gonorrhea Therapy: Clinical Trial Design Considerations., Edward W. Hook, Lori Newman, George Drusano, Scott Evans, H Hunter Handsfield, Ann E. Jerse, Fabian Y S Kong, Jeannette Y. Lee, Stephanie N. Taylor, and Carolyn Deal
Insights Into the Resistome of Bovine Clinical Mastitis Microbiome, a Key Factor in Disease Complication., M Nazmul Hoque, Arif Istiaq, Rebecca A. Clement, Keylie M. Gibson, Otun Saha, Ovinu Kibria Islam, Ruhshan Ahmed Abir, Munawar Sultana, Amam Zonaed Siddiki, Keith A. Crandall, and M Anwar Hossain
Microbiome dynamics and genomic determinants of bovine mastitis., M Nazmul Hoque, Arif Istiaq, M Shaminur Rahman, M Rafiul Islam, Azraf Anwar, A M A M Zonaed Siddiki, Munawar Sultana, Keith A. Crandall, and M Anwar Hossain
Prenatal Repair of Myelomeningocele and School-age Functional Outcomes., Amy J. Houtrow, Elizabeth A. Thom, Jack M. Fletcher, Pamela K. Burrows, N Scott Adzick, Nina H. Thomas, John W. Brock 3rd, Timothy Cooper, Hanmin Lee, Larissa Bilaniuk, Orit A. Glenn, Sumit Pruthi, Cora MacPherson, Diana L. Farmer, Mark P. Johnson, Lori J. Howell, Nalin Gupta, and William O. Walker
Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity., M Rafiul Islam, M Nazmul Hoque, M Shaminur Rahman, A S M Rubayet Ul Alam, Masuda Akther, J Akter Puspo, Salma Akter, Munawar Sultana, Keith A. Crandall, and M Anwar Hossain
Ticagrelor and Aspirin or Aspirin Alone in Acute Ischemic Stroke or TIA., S Claiborne Johnston, Pierre Amarenco, Hans Denison, Scott R. Evans, Anders Himmelmann, Stefan James, Mikael Knutsson, Per Ladenvall, Carlos A Molina, and Yongjun Wang
Infertility, gravidity, and risk of diabetes among high-risk women in the Diabetes Prevention Program Outcomes Study., Catherine Kim, Naji Younes, Marinella Temprosa, Sharon Edelstein, Ronald B. Goldberg, Maria G. Araneta, Amisha Wallia, Angela Brown, Christine Darwin, Uzoma Ibebuogu, Xavier Pi-Sunyer, and William C. Knowler
Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival., Allison R Kolbe, Matthew L Bendall, Alexander T Pearson, Doru Paul, Douglas F Nixon, Marcos Pérez-Losada, and Keith A. Crandall
Nonparametric Statistical Analysis, John M. Lachin
Nonparametric Statistical Analysis., John M. Lachin
Models to Assess the Association of a Semi-Quantitative Exposure With Outcomes., John M. Lachin, Ionut Bebu, and Barbara Braffett
Comment on Miller and Orchard: Understanding Metabolic Memory: A Tale of Two Studies. Diabetes 2020;69:291-299., John M. Lachin, David M Nathan, Bernard Zinman, and Ionut Bebu
The Emperor's New Clothes: PRospective Observational Evaluation of the Association Between Initial VancomycIn Exposure and Failure Rates Among ADult HospitalizEd Patients With Methicillin-resistant Staphylococcus aureus Bloodstream Infections (PROVIDE)., Thomas P. Lodise, Susan L. Rosenkranz, Matthew Finnemeyer, Scott Evans, Matthew Sims, Marcus J. Zervos, C Buddy Creech, Pratish C. Patel, Michael Keefer, Paul Riska, Fernanda P. Silveira, Marc Scheetz, Richard G. Wunderink, Martin Rodriguez, John Schrank, Susan C. Bleasdale, Sara Schultz, Michelle Barron, Ann Stapleton, Dannah Wray, Henry Chambers, Vance G. Fowler, and Thomas L. Holland
Geographical isolation and restricted gene flow drive speciation of Aegla singularis (Decapoda: Anomura: Aeglidae) in southern South America, G Loretan, E C. Rueda, J M. Cabrera, M. Perez-Losada, P A. Collins, and F Giri
Prevalence of microvascular and macrovascular disease in the Glycemia Reduction Approaches in Diabetes - A Comparative Effectiveness (GRADE) Study cohort., Kieren J Mather, Ionut Bebu, Chelsea Baker, Robert M Cohen, Jill P Crandall, Cyrus DeSouza, Jennifer B Green, M Sue Kirkman, Heidi Krause-Steinrauf, Mary Larkin, Jeremy Pettus, Elizabeth R Seaquist, Elsayed Z Soliman, Emily B Schroeder, Deborah J Wexler, and Rodica Pop-Busui
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable, Carla Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne Mieke Vandamme, Simon Dellicour, Samuel V. Scarpino, Charlotte Houldcroft, Julian Villabona-Arenas, Taylor K. Paisie, Nídia S. Trovão, Christina Boucher, Yun Zhang, Richard H. Scheuermann, Olivier Gascuel, Tommy Tsan Yuk Lam, Marc A. Suchard, Ana Abecasis, Eduan Wilkinson, Tulio de Oliveira, Ana I. Bento, Heiko A. Schmidt, Darren Martin, James Hadfield, Nuno Faria, Nathan D. Grubaugh, Richard A. Neher, Guy Baele, Philippe Lemey, Tanja Stadler, Jan Albert, and Keith A. Crandall
Evaluation of computational methods for human microbiome analysis using simulated data., Matthieu J Miossec, Sandro L Valenzuela, Marcos Pérez-Losada, W Evan Johnson, Keith A. Crandall, and Eduardo Castro-Nallar
Per- and polyfluoroalkyl substance plasma concentrations and metabolomic markers of type 2 diabetes in the Diabetes Prevention Program trial., Susanna D Mitro, Jinxi Liu, Lindsay M Jaacks, Abby F Fleisch, Paige L Williams, William C Knowler, Blandine Laferrère, Wei Perng, George A Bray, Amisha Wallia, Marie-France Hivert, Emily Oken, Tamarra M James-Todd, and Marinella Temprosa
Applying a Risk-benefit Analysis to Outcomes in Tuberculosis Clinical Trials., Sachiko Miyahara, Ritesh Ramchandani, Soyeon Kim, Scott R. Evans, Amita Gupta, Susan Swindells, Richard E Chaisson, and Grace Montepiedra
Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape., Bryan N Nguyen, Elaine W Shen, Janina Seemann, Adrienne M S Correa, James L O'Donnell, Andrew H Altieri, Nancy Knowlton, Keith A. Crandall, Scott P Egan, W Owen McMillan, and Matthieu Leray
Review of otitis media microbiome studies: What do they tell us?, Juan Carlos Nogues, Marcos Pérez-Losada, and Diego Preciado
Myelomeningocele sac associated with worse lower-extremity neurological sequelae: evidence for prenatal neural stretch injury?, E R Oliver, G G Heuer, Elizabeth A. Thom, Pamela K. Burrows, R A Didier, S E DeBari, J S Martin-Saavedra, J S Moldenhauer, J Jatres, L J Howell, N S Adzick, and B G Coleman
Hemiptera phylogenomic resources: tree-based orthology prediction and conserved exon identification., Christopher L. Owen, David B. Stern, Sarah K. Hilton, and Keith A. Crandall
High-throughput sequencing (HTS) for the analysis of viral populations, Marcos Pérez-Losada, Miguel Arenas, Juan Carlos Galán, M. Alma Bracho, Julia Hillung, Neris García-González, and Fernando González-Candelas
Testing the "Grandma Hypothesis": Characterizing Skin Microbiome Diversity as a Project-Based Learning Approach to Genomics., Marcos Pérez-Losada, Kelly M. Crandall, and Keith A. Crandall
Epitope-based chimeric peptide vaccine design against S, M and e proteins of SARS-CoV-2, the etiologic agent of COVID-19 pandemic: An in silico approach, M. Shaminur Rahman, M. Nazmul Hoque, M. Rafiul Islam, Salma Akter, A. S.M.Rubayet Ul Alam, Mohammad Anwar Siddique, Otun Saha, Md Mizanur Rahaman, Munawar Sultana, Keith A. Crandall, and M. Anwar Hossain
Innate IFN-lambda responses to dsRNA in the human infant airway epithelium and clinical regulatory factors during viral respiratory infections in early life., Kyle Salka, Maria Arroyo, Elizabeth Chorvinsky, Karima Abutaleb, Geovanny F Perez, Seth Wolf, Xilei Xuchen, Jered Weinstock, Maria J Gutierrez, Marcos Pérez-Losada, Dinesh K Pillai, and Gustavo Nino
Innate IFN-lambda responses to dsRNA in the human infant airway epithelium and clinical regulatory factors during viral respiratory infections in early life., Kyle Salka, Maria Arroyo, Elizabeth Chorvinsky, Karima Abutaleb, Geovanny F. Perez, Seth Wolf, Xilei Xuchen, Jered Weinstock, Maria J. Gutierrez, Marcos Pérez-Losada, Dinesh K. Pillai, and Gustavo Nino
Customized Probability of Vaginal Delivery With Induction of Labor and Expectant Management in Nulliparous Women at 39 Weeks of Gestation., Robert M Silver, Madeline Murguia Rice, William A Grobman, Uma M Reddy, Alan T N Tita, Gail Mallett, Kim Hill, Elizabeth A. Thom, Yasser Y El-Sayed, Ronald J Wapner, Dwight J Rouse, George R Saade, John M Thorp, Suneet P Chauhan, Edward K Chien, Brian M Casey, Ronald S Gibbs, Sindhu K Srinivas, Geeta K Swamy, Hyagriv N Simhan, and George A Macones
Claw asymmetry in crabs: Approaching an old issue from a new point of view, Federica Spani, Massimiliano Scalici, Keith A. Crandall, and Paolo Piras
Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data., Margaret C Steiner, Keylie M Gibson, and Keith A. Crandall
Modern Clinician-initiated Clinical Trials to Determine Optimal Therapy for Multidrug-resistant Gram-negative Infections., Adam G Stewart, Patrick N A Harris, Mark Chatfield, Scott R. Evans, David van Duin, and David L Paterson
Consumption of Beverages Containing Low-Calorie Sweeteners, Diet, and Cardiometabolic Health in Youth With Type 2 Diabetes., Allison C. Sylvetsky, Avinash Chandran, Sameera A. Talegawkar, Jean A. Welsh, Kimberly Drews, and Laure El Ghormli
Consumption of Diet Soda Sweetened with Sucralose and Acesulfame-Potassium Alters Inflammatory Transcriptome Pathways in Females with Overweight and Obesity, Allison C. Sylvetsky, Sabyasachi Sen, Patrick Merkel, Fiona Dore, David B. Stern, Curtis J. Henry, Hongyi Cai, Peter J. Walter, Keith A. Crandall, Kristina I. Rother, and Monica J. Hubal
Fetoscopic Tracheal Occlusion for Severe Congenital Diaphragmatic Hernia: The State of the Evidence., Elizabeth A. Thom
Variants in the Kisspeptin-GnRH Pathway Modulate the Hormonal Profile and Reproductive Outcomes., Camila Martins Trevisan, Michel Satya Naslavsky, Frederico Monfardini, Jaqueline Wang, Mayana Zatz, Carla Peluso, Renata Pellegrino, Fernanda Mafra, Hakon Hakonarson, Frederico Moraes Ferreira, Helder Nakaya, Denise Maria Christofolini, Erik Montagna, Keith A. Crandall, Caio Parente Barbosa, and Bianca Bianco
Long-term outcomes in Juvenile Myositis patients., Vladislav Tsaltskan, Annette Aldous, Sam Serafi, Anna Yakovleva, Heidi Sami, Gulnara Mamyrova, Ira N. Targoff, Adam Schiffenbauer, Frederick W. Miller, Samuel J. Simmens, Rodolfo Curiel, Olcay Y. Jones, and Lisa G. Rider
Variable selection methods for identifying predictor interactions in data with repeatedly measured binary outcomes., Bethany J Wolf, Yunyun Jiang, Sylvia H Wilson, and Jim C Oates
The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View., Joao B. Xavier, Vincent B. Young, Joseph Skufca, Fiona Ginty, Traci Testerman, Alexander T. Pearson, Paul Macklin, Amir Mitchell, Ilya Shmulevich, Lei Xie, J Gregory Caporaso, Keith A. Crandall, Nicole L. Simone, Filipa Godoy-Vitorino, Timothy J. Griffin, Katrine L. Whiteson, Heather H. Gustafson, Daniel J. Slade, Thomas M. Schmidt, Marina R S Walther-Antonio, Tal Korem, Bobbie-Jo M. Webb-Robertson, Mark P. Styczynski, W Evan Johnson, Christian Jobin, Jason M. Ridlon, Andrew Y. Koh, Michael Yu, Libusha Kelly, and Jennifer A. Wargo
The effects of environment and ontogeny on the skin microbiome of two Stegastes damselfishes (Pomacentridae) from the eastern Caribbean Sea, R Xavier, A Pereira, A Pagan, G C. Hendrick, M D. Nicholson, D Rosado, M C. Soares, and Marcos Perez-Losada
Sequential Multiple Assignment Randomized Trials for COMparing Personalized Antibiotic StrategieS (SMART COMPASS): Design Considerations, Xiaoyan Yin, Toshimitsu Hamasaki, and Scott R. Evans
Sequential Multiple Assignment Randomized Trials for COMparing Personalized Antibiotic StrategieS (SMART COMPASS): Design Considerations, Xiaoyan Yin, Toshimitsu Hamasaki, and Scott R. Evans
Submissions from 2019
Urinary angiotensinogen antedates the development of stage 3 CKD in patients with type 1 diabetes mellitus, Sheeba Ba Aqeel, Minghao Ye, Jan Wysocki, Alejandro Sanchez, Ahmed Khattab, Enrique Lores, Alfred Rademaker, Xiaoyu Gao, Ionut Bebu, Robert G. Nelson, Mark Molitch, Daniel Batlle, and Diabetes Control Complications Trual (DCCT)/ Epidemiology of Diabetes Interventions Complications (EDIC) Study
Interim Monitoring for Futility in Clinical Trials With Two Co-Primary Endpoints Using Prediction, Koko Asakura, Scott R. Evans, and Toshimitsu Hamasaki
Serum apolipoproteins and apolipoprotein-defined lipoprotein subclasses: a hypothesis-generating prospective study of cardiovascular events in T1D., Arpita Basu, Ionut Bebu, Alicia J Jenkins, Julie A Stoner, Ying Zhang, Richard L Klein, Maria F Lopes-Virella, W Timothy Garvey, Matthew J Budoff, Petar Alaupovic, and Timothy J Lyons
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression, Matthew L. Bendall, Miguel de Mulder, Luis Pedro Iniguez, Aaron Lecanda-Sanchez, Marcos Perez-Losada, Mario A. Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes-Teran, Keith A. Crandall, Christopher E. Ormsby, and Douglas F. Nixon
2573. Impact of Anaerobic Antibacterial Spectrum on Cystic Fibrosis Lung Microbiome Diversity and Pulmonary Function, Michael Bozzella, Hollis Chaney, Iman Sami, Geovanny Perez, Anastassios Koumbourlis, James Bost, Robert Freishtat, Keith Crandell, and Andrea Hahn
Rapid bacterial community changes during vermicomposting of grape marc derived from red winemaking, M. G. Brandon, M. Aira, A. R. Kolbe, N. de Andrade, M. Perez-Losada, and J Dominguez
Frailty and Its Correlates in Adults With Late Life Depression, P J. Brown, S P. Roose, K R. O'Boyle, A Ciarleglio, B Mass, K C. Igwe, S Chung, S Gomez, M Naqvi, A M. Brickman, and B R. Rutherford
2168. Comparison of Rapid Diagnostic Tests for Bloodstream Infections Using Desirability of Outcome Ranking Management of Antimicrobial Therapy (DOOR-MAT), Kimberly C. Claeys, Teri Hopkins, Zegbeh Kpadeh-Rogers, Yunyun Jiang, Scott R. Evans, J Kristie Johnson, and Surbhi Leekha
151. Comparing the Clinical Utility of Rapid Diagnostic Tests for Gram-Negative Bloodstream Infection Using a Desirability of Outcomes Ranking, Kimberly C. Claeys, Kathryn Schlaffer, Zegbeh Kpadeh-Rogers, Yunyun Jiang, Scott R. Evans, J Kristie Johnson, and Surbhi Leekha
Simultaneous Evaluation of Diagnostic Assays for Pharyngeal and Rectal Neisseria gonorrhoeae and Chlamydia trachomatis Using a Master Protocol, S B. Doernberg, L Komarow, T T T. Tran, Z Sund, M W. Pandori, D Jensen, E L. Tsalik, C D. Deal, H F. Chambers, V G. Fowler, S R. Evans, R Patel, J D. Klausner, and Antibacterrial Resistance Leadership Group
Evaluation of haplotype callers for next-generation sequencing of viruses, Anton Eliseev, Keylie M. Gibson, Pavel Avdeyev, Dmitry Novik, Matthew L. Bendall, Marcos Perez-Losada, Nikita Alexeev, and Keith A. Crandall
Presenting Risks and Benefits: Helping the Data Monitoring Committee Do Its Job, S R. Evans, R Bigelow, C Chuang-Stein, S S. Ellenberg, P Gallo, W He, Q Jiang, and F Rockhold
Towards a barnacle tree of life: Integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution, C. Ewers-Saucedo, C. L. Owen, M. Perez-Losada, J. T. Hoeg, H. Glenner, B. K K Chan, and K. A. Crandall
Analysis of ordered composite endpoints., Dean Follmann, Michael P Fay, Toshimitsu Hamasaki, and Scott Evans
Improving study conduct and data quality in clinical trials of chronic pain treatments: IMMPACT recommendations., Jennifer S. Gewandter, Robert H. Dworkin, Dennis C. Turk, Eric G. Devine, David Hewitt, Mark P. Jensen, Nathaniel P. Katz, Amy A. Kirkwood, Richard Malamut, John D. Markman, Bernard Vrijens, Laurie Burke, James N. Campbell, Daniel B. Carr, Philip G. Conaghan, Penney Cowan, Mittie K. Doyle, Robert R. Edwards, Scott R. Evans, John T. Farrar, Roy Freeman, Ian Gilron, Dean Juge, Robert D. Kerns, Ernest A. Kopecky, Michael P. McDermott, Gwendolyn Niebler, Kushang V. Patel, Richard Rauck, Andrew S C Rice, Michael Rowbotham, Nelson E. Sessler, Lee S. Simon, Neil Singla, Vladimir Skljarevski, Tina Tockarshewsky, Geertrui F. Vanhove, Ajay D. Wasan, and James Witter
Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health, Keylie M. Gibson, Bryan N. Nguyen, Laura M. Neumann, Michele Miller, Peter Buss, Savel Daniels, Michelle J. Ahn, Keith A. Crandall, and Budhan Pukazhenthi
Corrigendum: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC, Keylie M. Gibson, Margaret C. Steiner, Seble Kassaye, Frank Maldarelli, Zehava Grossman, Marcos Perez-Losada, and Keith A. Crandall
Corrigendum to: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC (Frontiers in Microbiology, (2019), 10, 10.3389/fmicb.2019.00369), Keylie M. Gibson, Margaret C. Steiner, Seble Kassaye, Frank Maldarelli, Zehava Grossman, Marcos Pérez-Losada, and Keith A. Crandall
Association of Subclinical Hearing Loss With Cognitive Performance, J S. Golub, A M. Brickman, A J. Ciarleglio, N Schupf, and J A. Luchsinger
SUBCLINICAL AGE-RELATED HEARING LOSS IS INVERSELY ASSOCIATED WITH DEPRESSIVE SYMPTOMS, Justin S. Golub, Katharine K. Brewster, Adam Brickman, Adam Ciarleglio, Jose Luchsinger, and Bret Rutherford
Screening eye exams in youth with type 1 diabetes under 18 years of age: Once may be enough?, Rose A. Gubitosi-Klug, Ionut Bebu, Neil H. White, John Malone, Ryan Miller, Gayle M. Lorenzi, Dean P. Hainsworth, Victoria R. Trapani, John M. Lachin, and William V. Tamborlane
Mutated CEACAMs Disrupt Transforming Growth Factor beta Signaling and Alter the Intestinal Microbiome to Promote Colorectal Carcinogenesis, Shoujun Gu, Sobia Zaidi, Md Imtaiyaz Hassan, Taj Mohammad, Tathiane M. Malta, Houtan Noushmehr, Bryan Nguyen, Keith A. Crandall, Jigisha Srivastav, Vincent Obias, Paul Lin, Bao-Ngoc Nguyen, Michael Yao, Ren Yao, Charles Hadley King, Raja Mazumder, Bibhuti Mishra, Shuyun Rao, and Lopa Mishra
Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis, Andrea Hahn, Hani Fanous, Caroline Jensen, Hollis Chaney, Iman Sami, Geovanny F. Perez, Anastassios C. Koumbourlis, Stan Louie, James E. Bost, John N. van den Anker, Robert J. Freishtat, Edith T. Zemanick, and Keith A. Crandall
Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis., M Nazmul Hoque, Arif Istiaq, Rebecca A. Clement, Munawar Sultana, Keith A. Crandall, Amam Zonaed Siddiki, and M Anwar Hossain
Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden, Suchitra K. Hourigan, Michelle Ahn, Keylie M. Gibson, Marcos Perez-Losada, Grace Felix, Melissa Weidner, Ian Leibowitz, John E. Niederhuber, Cynthia L. Sears, Keith A. Crandall, and Maria Oliva-Hemker
Diet quality and hearing loss among middle-older aged adults in the USA: findings from National Health and Nutrition Examination Survey, Q Huang, Y Jin, N S. Reed, Y Ma, M C. Power, and S A. Talegawkar
Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus, Luis P. Iniguez, Miguel de Mulder Rougvie, Nathaniel Stearrett, Richard B. Jones, Christopher E. Ormsby, Gustavo Reyes-Teran, Keith A. Crandell, Douglas F. Nixon, and Matthew L. Bendall
Evaluation of the longitudinal change in health behavior profiles across treatment groups in the TODAY clinical trial., Jill L. Kaar, Sarah J. Schmiege, Kimberly Drews, Janine Higgins, Natalie Walders-Abramson, Elvira Isganaitis, Steven M. Willi, Marsha D. Marcus, Philip S. Zeitler, and Megan M. Kelsey