Submissions from 2020
The Emperor's New Clothes: PRospective Observational Evaluation of the Association Between Initial VancomycIn Exposure and Failure Rates Among ADult HospitalizEd Patients With Methicillin-resistant Staphylococcus aureus Bloodstream Infections (PROVIDE)., Thomas P. Lodise, Susan L. Rosenkranz, Matthew Finnemeyer, Scott Evans, Matthew Sims, Marcus J. Zervos, C Buddy Creech, Pratish C. Patel, Michael Keefer, Paul Riska, Fernanda P. Silveira, Marc Scheetz, Richard G. Wunderink, Martin Rodriguez, John Schrank, Susan C. Bleasdale, Sara Schultz, Michelle Barron, Ann Stapleton, Dannah Wray, Henry Chambers, Vance G. Fowler, and Thomas L. Holland
Geographical isolation and restricted gene flow drive speciation of Aegla singularis (Decapoda: Anomura: Aeglidae) in southern South America, G Loretan, E C. Rueda, J M. Cabrera, M. Perez-Losada, P A. Collins, and F Giri
Prevalence of microvascular and macrovascular disease in the Glycemia Reduction Approaches in Diabetes - A Comparative Effectiveness (GRADE) Study cohort., Kieren J Mather, Ionut Bebu, Chelsea Baker, Robert M Cohen, Jill P Crandall, Cyrus DeSouza, Jennifer B Green, M Sue Kirkman, Heidi Krause-Steinrauf, Mary Larkin, Jeremy Pettus, Elizabeth R Seaquist, Elsayed Z Soliman, Emily B Schroeder, Deborah J Wexler, and Rodica Pop-Busui
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable, Carla Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne Mieke Vandamme, Simon Dellicour, Samuel V. Scarpino, Charlotte Houldcroft, Julian Villabona-Arenas, Taylor K. Paisie, Nídia S. Trovão, Christina Boucher, Yun Zhang, Richard H. Scheuermann, Olivier Gascuel, Tommy Tsan Yuk Lam, Marc A. Suchard, Ana Abecasis, Eduan Wilkinson, Tulio de Oliveira, Ana I. Bento, Heiko A. Schmidt, Darren Martin, James Hadfield, Nuno Faria, Nathan D. Grubaugh, Richard A. Neher, Guy Baele, Philippe Lemey, Tanja Stadler, Jan Albert, and Keith A. Crandall
Evaluation of computational methods for human microbiome analysis using simulated data., Matthieu J Miossec, Sandro L Valenzuela, Marcos Pérez-Losada, W Evan Johnson, Keith A. Crandall, and Eduardo Castro-Nallar
Per- and polyfluoroalkyl substance plasma concentrations and metabolomic markers of type 2 diabetes in the Diabetes Prevention Program trial., Susanna D Mitro, Jinxi Liu, Lindsay M Jaacks, Abby F Fleisch, Paige L Williams, William C Knowler, Blandine Laferrère, Wei Perng, George A Bray, Amisha Wallia, Marie-France Hivert, Emily Oken, Tamarra M James-Todd, and Marinella Temprosa
Applying a Risk-benefit Analysis to Outcomes in Tuberculosis Clinical Trials., Sachiko Miyahara, Ritesh Ramchandani, Soyeon Kim, Scott R. Evans, Amita Gupta, Susan Swindells, Richard E Chaisson, and Grace Montepiedra
Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape., Bryan N Nguyen, Elaine W Shen, Janina Seemann, Adrienne M S Correa, James L O'Donnell, Andrew H Altieri, Nancy Knowlton, Keith A. Crandall, Scott P Egan, W Owen McMillan, and Matthieu Leray
Review of otitis media microbiome studies: What do they tell us?, Juan Carlos Nogues, Marcos Pérez-Losada, and Diego Preciado
Myelomeningocele sac associated with worse lower-extremity neurological sequelae: evidence for prenatal neural stretch injury?, E R Oliver, G G Heuer, Elizabeth A. Thom, Pamela K. Burrows, R A Didier, S E DeBari, J S Martin-Saavedra, J S Moldenhauer, J Jatres, L J Howell, N S Adzick, and B G Coleman
Hemiptera phylogenomic resources: tree-based orthology prediction and conserved exon identification., Christopher L. Owen, David B. Stern, Sarah K. Hilton, and Keith A. Crandall
High-throughput sequencing (HTS) for the analysis of viral populations, Marcos Pérez-Losada, Miguel Arenas, Juan Carlos Galán, M. Alma Bracho, Julia Hillung, Neris García-González, and Fernando González-Candelas
Testing the "Grandma Hypothesis": Characterizing Skin Microbiome Diversity as a Project-Based Learning Approach to Genomics., Marcos Pérez-Losada, Kelly M. Crandall, and Keith A. Crandall
Epitope-based chimeric peptide vaccine design against S, M and e proteins of SARS-CoV-2, the etiologic agent of COVID-19 pandemic: An in silico approach, M. Shaminur Rahman, M. Nazmul Hoque, M. Rafiul Islam, Salma Akter, A. S.M.Rubayet Ul Alam, Mohammad Anwar Siddique, Otun Saha, Md Mizanur Rahaman, Munawar Sultana, Keith A. Crandall, and M. Anwar Hossain
Innate IFN-lambda responses to dsRNA in the human infant airway epithelium and clinical regulatory factors during viral respiratory infections in early life., Kyle Salka, Maria Arroyo, Elizabeth Chorvinsky, Karima Abutaleb, Geovanny F Perez, Seth Wolf, Xilei Xuchen, Jered Weinstock, Maria J Gutierrez, Marcos Pérez-Losada, Dinesh K Pillai, and Gustavo Nino
Innate IFN-lambda responses to dsRNA in the human infant airway epithelium and clinical regulatory factors during viral respiratory infections in early life., Kyle Salka, Maria Arroyo, Elizabeth Chorvinsky, Karima Abutaleb, Geovanny F. Perez, Seth Wolf, Xilei Xuchen, Jered Weinstock, Maria J. Gutierrez, Marcos Pérez-Losada, Dinesh K. Pillai, and Gustavo Nino
Customized Probability of Vaginal Delivery With Induction of Labor and Expectant Management in Nulliparous Women at 39 Weeks of Gestation., Robert M Silver, Madeline Murguia Rice, William A Grobman, Uma M Reddy, Alan T N Tita, Gail Mallett, Kim Hill, Elizabeth A. Thom, Yasser Y El-Sayed, Ronald J Wapner, Dwight J Rouse, George R Saade, John M Thorp, Suneet P Chauhan, Edward K Chien, Brian M Casey, Ronald S Gibbs, Sindhu K Srinivas, Geeta K Swamy, Hyagriv N Simhan, and George A Macones
Claw asymmetry in crabs: Approaching an old issue from a new point of view, Federica Spani, Massimiliano Scalici, Keith A. Crandall, and Paolo Piras
Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data., Margaret C Steiner, Keylie M Gibson, and Keith A. Crandall
Modern Clinician-initiated Clinical Trials to Determine Optimal Therapy for Multidrug-resistant Gram-negative Infections., Adam G Stewart, Patrick N A Harris, Mark Chatfield, Scott R. Evans, David van Duin, and David L Paterson
Consumption of Beverages Containing Low-Calorie Sweeteners, Diet, and Cardiometabolic Health in Youth With Type 2 Diabetes., Allison C. Sylvetsky, Avinash Chandran, Sameera A. Talegawkar, Jean A. Welsh, Kimberly Drews, and Laure El Ghormli
Consumption of Diet Soda Sweetened with Sucralose and Acesulfame-Potassium Alters Inflammatory Transcriptome Pathways in Females with Overweight and Obesity, Allison C. Sylvetsky, Sabyasachi Sen, Patrick Merkel, Fiona Dore, David B. Stern, Curtis J. Henry, Hongyi Cai, Peter J. Walter, Keith A. Crandall, Kristina I. Rother, and Monica J. Hubal
Fetoscopic Tracheal Occlusion for Severe Congenital Diaphragmatic Hernia: The State of the Evidence., Elizabeth A. Thom
Variants in the Kisspeptin-GnRH Pathway Modulate the Hormonal Profile and Reproductive Outcomes., Camila Martins Trevisan, Michel Satya Naslavsky, Frederico Monfardini, Jaqueline Wang, Mayana Zatz, Carla Peluso, Renata Pellegrino, Fernanda Mafra, Hakon Hakonarson, Frederico Moraes Ferreira, Helder Nakaya, Denise Maria Christofolini, Erik Montagna, Keith A. Crandall, Caio Parente Barbosa, and Bianca Bianco
Long-term outcomes in Juvenile Myositis patients., Vladislav Tsaltskan, Annette Aldous, Sam Serafi, Anna Yakovleva, Heidi Sami, Gulnara Mamyrova, Ira N. Targoff, Adam Schiffenbauer, Frederick W. Miller, Samuel J. Simmens, Rodolfo Curiel, Olcay Y. Jones, and Lisa G. Rider
Variable selection methods for identifying predictor interactions in data with repeatedly measured binary outcomes., Bethany J Wolf, Yunyun Jiang, Sylvia H Wilson, and Jim C Oates
The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View., Joao B. Xavier, Vincent B. Young, Joseph Skufca, Fiona Ginty, Traci Testerman, Alexander T. Pearson, Paul Macklin, Amir Mitchell, Ilya Shmulevich, Lei Xie, J Gregory Caporaso, Keith A. Crandall, Nicole L. Simone, Filipa Godoy-Vitorino, Timothy J. Griffin, Katrine L. Whiteson, Heather H. Gustafson, Daniel J. Slade, Thomas M. Schmidt, Marina R S Walther-Antonio, Tal Korem, Bobbie-Jo M. Webb-Robertson, Mark P. Styczynski, W Evan Johnson, Christian Jobin, Jason M. Ridlon, Andrew Y. Koh, Michael Yu, Libusha Kelly, and Jennifer A. Wargo
The effects of environment and ontogeny on the skin microbiome of two Stegastes damselfishes (Pomacentridae) from the eastern Caribbean Sea, R Xavier, A Pereira, A Pagan, G C. Hendrick, M D. Nicholson, D Rosado, M C. Soares, and Marcos Perez-Losada
Sequential Multiple Assignment Randomized Trials for COMparing Personalized Antibiotic StrategieS (SMART COMPASS): Design Considerations, Xiaoyan Yin, Toshimitsu Hamasaki, and Scott R. Evans
Sequential Multiple Assignment Randomized Trials for COMparing Personalized Antibiotic StrategieS (SMART COMPASS): Design Considerations, Xiaoyan Yin, Toshimitsu Hamasaki, and Scott R. Evans
Submissions from 2019
Urinary angiotensinogen antedates the development of stage 3 CKD in patients with type 1 diabetes mellitus, Sheeba Ba Aqeel, Minghao Ye, Jan Wysocki, Alejandro Sanchez, Ahmed Khattab, Enrique Lores, Alfred Rademaker, Xiaoyu Gao, Ionut Bebu, Robert G. Nelson, Mark Molitch, Daniel Batlle, and Diabetes Control Complications Trual (DCCT)/ Epidemiology of Diabetes Interventions Complications (EDIC) Study
Interim Monitoring for Futility in Clinical Trials With Two Co-Primary Endpoints Using Prediction, Koko Asakura, Scott R. Evans, and Toshimitsu Hamasaki
Serum apolipoproteins and apolipoprotein-defined lipoprotein subclasses: a hypothesis-generating prospective study of cardiovascular events in T1D., Arpita Basu, Ionut Bebu, Alicia J Jenkins, Julie A Stoner, Ying Zhang, Richard L Klein, Maria F Lopes-Virella, W Timothy Garvey, Matthew J Budoff, Petar Alaupovic, and Timothy J Lyons
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression, Matthew L. Bendall, Miguel de Mulder, Luis Pedro Iniguez, Aaron Lecanda-Sanchez, Marcos Perez-Losada, Mario A. Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes-Teran, Keith A. Crandall, Christopher E. Ormsby, and Douglas F. Nixon
2573. Impact of Anaerobic Antibacterial Spectrum on Cystic Fibrosis Lung Microbiome Diversity and Pulmonary Function, Michael Bozzella, Hollis Chaney, Iman Sami, Geovanny Perez, Anastassios Koumbourlis, James Bost, Robert Freishtat, Keith Crandell, and Andrea Hahn
Rapid bacterial community changes during vermicomposting of grape marc derived from red winemaking, M. G. Brandon, M. Aira, A. R. Kolbe, N. de Andrade, M. Perez-Losada, and J Dominguez
Frailty and Its Correlates in Adults With Late Life Depression, P J. Brown, S P. Roose, K R. O'Boyle, A Ciarleglio, B Mass, K C. Igwe, S Chung, S Gomez, M Naqvi, A M. Brickman, and B R. Rutherford
2168. Comparison of Rapid Diagnostic Tests for Bloodstream Infections Using Desirability of Outcome Ranking Management of Antimicrobial Therapy (DOOR-MAT), Kimberly C. Claeys, Teri Hopkins, Zegbeh Kpadeh-Rogers, Yunyun Jiang, Scott R. Evans, J Kristie Johnson, and Surbhi Leekha
151. Comparing the Clinical Utility of Rapid Diagnostic Tests for Gram-Negative Bloodstream Infection Using a Desirability of Outcomes Ranking, Kimberly C. Claeys, Kathryn Schlaffer, Zegbeh Kpadeh-Rogers, Yunyun Jiang, Scott R. Evans, J Kristie Johnson, and Surbhi Leekha
Simultaneous Evaluation of Diagnostic Assays for Pharyngeal and Rectal Neisseria gonorrhoeae and Chlamydia trachomatis Using a Master Protocol, S B. Doernberg, L Komarow, T T T. Tran, Z Sund, M W. Pandori, D Jensen, E L. Tsalik, C D. Deal, H F. Chambers, V G. Fowler, S R. Evans, R Patel, J D. Klausner, and Antibacterrial Resistance Leadership Group
Evaluation of haplotype callers for next-generation sequencing of viruses, Anton Eliseev, Keylie M. Gibson, Pavel Avdeyev, Dmitry Novik, Matthew L. Bendall, Marcos Perez-Losada, Nikita Alexeev, and Keith A. Crandall
Presenting Risks and Benefits: Helping the Data Monitoring Committee Do Its Job, S R. Evans, R Bigelow, C Chuang-Stein, S S. Ellenberg, P Gallo, W He, Q Jiang, and F Rockhold
Towards a barnacle tree of life: Integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution, C. Ewers-Saucedo, C. L. Owen, M. Perez-Losada, J. T. Hoeg, H. Glenner, B. K K Chan, and K. A. Crandall
Analysis of ordered composite endpoints., Dean Follmann, Michael P Fay, Toshimitsu Hamasaki, and Scott Evans
Improving study conduct and data quality in clinical trials of chronic pain treatments: IMMPACT recommendations., Jennifer S. Gewandter, Robert H. Dworkin, Dennis C. Turk, Eric G. Devine, David Hewitt, Mark P. Jensen, Nathaniel P. Katz, Amy A. Kirkwood, Richard Malamut, John D. Markman, Bernard Vrijens, Laurie Burke, James N. Campbell, Daniel B. Carr, Philip G. Conaghan, Penney Cowan, Mittie K. Doyle, Robert R. Edwards, Scott R. Evans, John T. Farrar, Roy Freeman, Ian Gilron, Dean Juge, Robert D. Kerns, Ernest A. Kopecky, Michael P. McDermott, Gwendolyn Niebler, Kushang V. Patel, Richard Rauck, Andrew S C Rice, Michael Rowbotham, Nelson E. Sessler, Lee S. Simon, Neil Singla, Vladimir Skljarevski, Tina Tockarshewsky, Geertrui F. Vanhove, Ajay D. Wasan, and James Witter
Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health, Keylie M. Gibson, Bryan N. Nguyen, Laura M. Neumann, Michele Miller, Peter Buss, Savel Daniels, Michelle J. Ahn, Keith A. Crandall, and Budhan Pukazhenthi
Corrigendum: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC, Keylie M. Gibson, Margaret C. Steiner, Seble Kassaye, Frank Maldarelli, Zehava Grossman, Marcos Perez-Losada, and Keith A. Crandall
Corrigendum to: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC (Frontiers in Microbiology, (2019), 10, 10.3389/fmicb.2019.00369), Keylie M. Gibson, Margaret C. Steiner, Seble Kassaye, Frank Maldarelli, Zehava Grossman, Marcos Pérez-Losada, and Keith A. Crandall
Association of Subclinical Hearing Loss With Cognitive Performance, J S. Golub, A M. Brickman, A J. Ciarleglio, N Schupf, and J A. Luchsinger
SUBCLINICAL AGE-RELATED HEARING LOSS IS INVERSELY ASSOCIATED WITH DEPRESSIVE SYMPTOMS, Justin S. Golub, Katharine K. Brewster, Adam Brickman, Adam Ciarleglio, Jose Luchsinger, and Bret Rutherford
Screening eye exams in youth with type 1 diabetes under 18 years of age: Once may be enough?, Rose A. Gubitosi-Klug, Ionut Bebu, Neil H. White, John Malone, Ryan Miller, Gayle M. Lorenzi, Dean P. Hainsworth, Victoria R. Trapani, John M. Lachin, and William V. Tamborlane
Mutated CEACAMs Disrupt Transforming Growth Factor beta Signaling and Alter the Intestinal Microbiome to Promote Colorectal Carcinogenesis, Shoujun Gu, Sobia Zaidi, Md Imtaiyaz Hassan, Taj Mohammad, Tathiane M. Malta, Houtan Noushmehr, Bryan Nguyen, Keith A. Crandall, Jigisha Srivastav, Vincent Obias, Paul Lin, Bao-Ngoc Nguyen, Michael Yao, Ren Yao, Charles Hadley King, Raja Mazumder, Bibhuti Mishra, Shuyun Rao, and Lopa Mishra
Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis, Andrea Hahn, Hani Fanous, Caroline Jensen, Hollis Chaney, Iman Sami, Geovanny F. Perez, Anastassios C. Koumbourlis, Stan Louie, James E. Bost, John N. van den Anker, Robert J. Freishtat, Edith T. Zemanick, and Keith A. Crandall
Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis., M Nazmul Hoque, Arif Istiaq, Rebecca A. Clement, Munawar Sultana, Keith A. Crandall, Amam Zonaed Siddiki, and M Anwar Hossain
Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden, Suchitra K. Hourigan, Michelle Ahn, Keylie M. Gibson, Marcos Perez-Losada, Grace Felix, Melissa Weidner, Ian Leibowitz, John E. Niederhuber, Cynthia L. Sears, Keith A. Crandall, and Maria Oliva-Hemker
Diet quality and hearing loss among middle-older aged adults in the USA: findings from National Health and Nutrition Examination Survey, Q Huang, Y Jin, N S. Reed, Y Ma, M C. Power, and S A. Talegawkar
Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus, Luis P. Iniguez, Miguel de Mulder Rougvie, Nathaniel Stearrett, Richard B. Jones, Christopher E. Ormsby, Gustavo Reyes-Teran, Keith A. Crandell, Douglas F. Nixon, and Matthew L. Bendall
Evaluation of the longitudinal change in health behavior profiles across treatment groups in the TODAY clinical trial., Jill L. Kaar, Sarah J. Schmiege, Kimberly Drews, Janine Higgins, Natalie Walders-Abramson, Elvira Isganaitis, Steven M. Willi, Marsha D. Marcus, Philip S. Zeitler, and Megan M. Kelsey
Machine learning approaches to predict lupus disease activity from gene expression data, Brian Kegerreis, Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Adam C. Labonte, Chen Zeng, Nathaniel Stearrett, Keith A. Crandall, Peter E. Lipsky, and Amrie C. Grammer
Baseline human gut microbiota profile in healthy people and standard reporting template, Charles H. King, Hiral Desai, Allison C. Sylvetsky, Jonathan LoTempio, Shant Ayanyan, Jill Carrie, Keith A. Crandall, Brian C. Fochtman, Lusine Gasparyan, Naila Gulzar, Paul Howell, Najy Issa, Konstantinos Krampis, Lopa Mishra, Hiroki Morizono, Joseph R. Pisegna, Shuyun Rao, Yao Ren, Vahan Simonyan, Krista Smith, Sharanjit VedBrat, Michael D. Yao, and Raja Mazumder
Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses, Allison R. Kolbe, Eduardo Castro-Nallar, Diego Preciado, and Marcos E. Perez-Losada
Closed testing of each group versus the others combined in a multiple group analysis, J. M. Lachin and I Bebu
Rationale and Design for a GRADE Substudy of Continuous Glucose Monitoring., Mary E. Larkin, David M. Nathan, Ionut Bebu, Heidi Krause-Steinrauf, William H. Herman, John M. Higgins, Margaret Tiktin, Robert M. Cohen, Claire Lund, Richard M. Bergenstal, Mary L. Johnson, and Valerie Arends
The Kronos Early Estrogen Prevention Study (KEEPS): what have we learned?, Virginia M Miller, Fredrick Naftolin, Sanjay Asthana, Dennis M. Black, Eliot A. Brinton, Matthew J. Budoff, Marcelle I. Cedars, N Maritza Dowling, Carey E. Gleason, Howard N. Hodis, Muthuvel Jayachandran, Kejal Kantarci, Rogerio A. Lobo, JoAnn E. Manson, Lubna Pal, Nanette F. Santoro, Hugh S. Taylor, and S Mitchell Harman
Applying Risk-Benefit Analysis to Outcomes in TB Clinical Trials., Sachiko Miyahara, Ritesh Ramchandani, Soyeon Kim, Scott R. Evans, Amita Gupta, Susan Swindells, Richard E. Chaisson, and Grace Montepiedra
Does diabetes prevention translate into reduced long-term vascular complications of diabetes?, David M. Nathan, Peter H. Bennett, Jill P. Crandall, Sharon L. Edelstein, Ronald B. Goldberg, Steven E. Kahn, William C. Knowler, Kieren J. Mather, Sunder Mudaliar, Trevor J. Orchard, Marinella Temprosa, and Neil H. White
Myelomeningocele sac associated with worse lower extremity neurologic sequela: evidence for prenatal neural stretch injury?, E R. Oliver, G G. Heuer, E A. Thom, P K. Burrows, R A. Didier, S E. DeBari, J S. Martin-Saavedra, J S. Moldenhauer, J Jatres, L J. Howell, N S. Adzick, and B G. Coleman
Optimising treatment decision rules through generated effect modifiers: a precision medicine tutorial, Eva Petkova, Hyung Park, Adam Ciarleglio, R. Todd Ogden, and Thaddeus Tarpey
Recombinant Opisthorchis viverrini tetraspanin expressed in Pichia pastoris as a potential vaccine candidate for opisthorchiasis, L T. Phung, S Chaiyadet, N Hongsrichan, J Sotillo, H D T Dieu, C Q. Tran, P J. Brindley, A Loukas, and T Laha
Diabetes Care Editors' Expert Forum 2018: Managing Big Data for Diabetes Research and Care, M C. Riddle, L Blonde, H C. Gerstein, E W. Gregg, R R. Holman, J M. Lachin, G A. Nichols, A Turchin, and W T. Cefalu
Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)., Daniela Rosado, Raquel Xavier, Ricardo Severino, Fernando Tavares, Jo Cable, and Marcos Pérez-Losada
Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis, V. K. Shanmugam, D. Jones, S. McNish, M. L. Bendall, and K. A. Crandall
Cancer Incidence and Mortality in Firefighters: A State-of-the-Art Review and Meta-َAnalysis, E. S. Soteriades, J. Kim, C. A. Christophi, and S. N. Kales
ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data, Liam Spurr, Nawaf Alomran, Pavlos Bousounis, Dacian Reece-Stremtan, NM Prashant, Honguy Liu, Piotr Slowinski, Muzi Li, Qianqian Zhang, Justin Sein, Gabriel Asher, Keith A. Crandall, Krasimira Tsaneva-Atanasova, and Anelia Horvath
Modern clinician-initiated clinical trials to determine optimal therapy for multi-drug resistant Gram-negative infections, A G. Stewart, P N A Harris, M Chatfield, S R. Evans, D van Duin, and D L. Paterson
2276. Clinical Epidemiology of the Carbapenem-Resistant Enterobacteriaceae (CRE) Epidemic in Colombia: A Multicenter Prospective Study, Sandra Liliana Valderrama-Beltran, Lauren Komarow, Soraya Salcedo, Laura Mora, Adriana Marin, Karen M. Ordonez Diaz, Edilberto Cristancho Quintero, Beatriz Elena Ariza, Gloria Cortes, De la Hoz Alejandro, Jose Onate, Elsa Yasmin Vente, Viviana Mendez, Jairo Figueroa, Luz Osorio, Carlos Moreno, Jinnethe Reyes, Luis Dulcey, Pallares Christian, Henry Chambers, Vance G. Fowler, Scott R. Evans, Barry Kreiswirth, Maria Virginia Villegas, Robert A. Bonomo, David van Duin, and Cesar A. Arias
Randomization tests for multiarmed randomized clinical trials., Yanying Wang, William F. Rosenberger, and Diane Uschner
Acinetobacter infections, B. M. Wilson, F. Perez, Q. Pan, Y. Jiang, S. Evans, and R. A. Bonomo
A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans, Joanna M. Wolfe, Jesse W. Breinholt, Keith A. Crandall, Alan R. Lemmon, Emily Moriarty Lemmon, Laura E. Timm, Mark E. Siddall, and Heather D. Bracken-Grissom
The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies., Bing Yu, Krista A. Zanetti, Marinella Temprosa, Demetrius Albanes, Nathan Appel, Clara Barrios Barrera, Yoav Ben-Shlomo, Eric Boerwinkle, Juan P. Casas, Clary Clish, Caroline Dale, Abbas Dehghan, Andriy Derkach, A Heather Eliassen, Paul Elliott, Eoin Fahy, Christian Gieger, Marc J. Gunter, Sei Harada, Tamara Harris, Deron R. Herr, David Herrington, Joel N. Hirschhorn, Elise Hoover, Ann W. Hsing, Mattias Johansson, Rachel S. Kelly, Chin Meng Khoo, Mika Kivimäki, Bruce S. Kristal, Claudia Langenberg, Jessica Lasky-Su, Deborah A. Lawlor, Luca A. Lotta, Massimo Mangino, Loïc Le Marchand, Ewy Mathé, Charles E. Matthews, Cristina Menni, Lorelei A. Mucci, Rachel Murphy, Matej Oresic, Eric Orwoll, Jennifer Ose, Alexandre C. Pereira, Mary C. Playdon, Lucilla Poston, Jackie Price, Qibin Qi, Kathryn Rexrode, Adam Risch, Joshua Sampson, Wei Jie Seow, Howard D. Sesso, Svati H. Shah, Xiao-Ou Shu, Gordon C S Smith, Ulla Sovio, Victoria L. Stevens, Rachael Stolzenberg-Solomon, Toru Takebayashi, Therese Tillin, Ruth Travis, Ioanna Tzoulaki, Cornelia M. Ulrich, Ramachandran S. Vasan, Mukesh Verma, Ying Wang, Nick J. Wareham, Andrew Wong, Naji Younes, Hua Zhao, Wei Zheng, and Steven C. Moore
Submissions from 2018
Properties of composite time to first event versus joint marginal analyses of multiple outcomes, Ionut Bebu and John M. Lachin
Long-Term Benefit of Empagliflozin on Life Expectancy in Patients With Type 2 Diabetes Mellitus and Established Cardiovascular Disease., Brian Claggett, John M. Lachin, Stefan Hantel, David Fitchett, Silvio E. Inzucchi, Hans J. Woerle, Jyothis T. George, and Bernard Zinman
Invasion by non-indigenous freshwater decapods of Malta and Sicily, central Mediterranean Sea, Alan Deidun, Arnold Sciberras, Justin Formosa, Bruno Zava, Gianni Insacco, Maria Corsini-Foka, and Keith A. Crandall
Multigene phylogeny reveals two new isolated and relic earthworm genera (Oligochaeta: Lumbricidae), Jorge Dominguez, Manuel Aira, Pablo G. Porto, Dario J. Diaz Cosin, and Marcos Perez-Losada
Benchmark evaluation of true single molecular sequencing to determine cystic fibrosis airway microbiome diversity, Andrea Hahn, Matthew L. Bendall, Keylie M. Gibson, Hollis Chaney, Iman Sami, Geovanny F. Perez, Anastassios C. Koumbourlis, Timothy A. McCaffrey, Robert J. Freishtat, and Keith A. Crandall
Antibiotic multidrug resistance in the cystic fibrosis airway microbiome is associated with decreased diversity, Andrea Hahn, Aszia Burrell, Hani Fanous, Hollis Chaney, Iman Sami, Geovanny F. Perez, Anastassios C. Koumbourlis, Robert J. Freishtat, and Keith A. Crandall
Microbial diversity within the airway microbiome in chronic pediatric lung diseases, Andrea Hahn, Stephanie Warnken, Marcos Pérez-Losada, Robert J. Freishtat, and Keith A. Crandall
De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: Narrowing the US origin(s) of the invasive kudzu, Matthew S. Haynsen, Mohammad Vatanparast, Gouri Mahadwar, Dennis Zhu, Roy Z. Moger-Reischer, Jeff J. Doyle, Keith A. Crandall, and Ashley N. Egan
Comparing neurodevelopmental outcomes at 30 months by presence of hydrocephalus and shunt status among children enrolled in the MOMS trial, A J. Houtrow, P K. Burrows, and E A. Thom
Seminal simian immunodeficiency virus in chronically infected cynomolgus macaques is dominated by virus originating from multiple genital organs, Laurent Houzet, Marcos Pérez-Losada, Giulia Matusali, Claire Deleage, Nathalie Dereuddre-Bosquet, Anne Pascale Satie, Florence Aubry, Emmanuelle Becker, Bernard Jégou, Roger Le Grand, Brandon F. Keele, Keith A. Crandall, and Nathalie Dejucq-Rainsford
Earth BioGenome Project: Sequencing life for the future of life, Harris A. Lewin, Gene E. Robinson, W. John Kress, William J. Baker, Jonathan Coddington, Keith A. Crandall, Richard Durbin, Scott V. Edwards, Félix Forest, M. Thomas P. Gilbert, Melissa M. Goldstein, Igor V. Grigoriev, Kevin J. Hackett, David Haussler, Erich D. Jarvis, Warren E. Johnson, Aristides Patrinos, Stephen Richards, Juan Carlos Castilla-Rubio, Marie Anne Van Sluys, Pamela S. Soltis, Xun Xu, Huanming Yang, and Guojie Zhang
Identification of Burkholderia fungorum in the urine of an individual with spinal cord injury and augmentation cystoplasty using 16S sequencing: copathogen or innocent bystander?, Emma Nally, Suzanne L. Groah, Marcos Perez-Losada, Ljubica Caldovic, Inger Ljungberg, Neel J. Chandel, Bruce Sprague, Michael H. Hsieh, and Hans G. Pohl
Pediatric asthma comprises different phenotypic clusters with unique nasal microbiotas, Marcos Pérez-Losada, Kayla J. Authelet, Claire E. Hoptay, Christine Kwak, Keith A. Crandall, and Robert J. Freishtat
Systematic pan-cancer analysis of somatic allele frequency, Liam Spurr, Muzi Li, Nawaf Alomran, Qianqian Zhang, Paula Restrepo, Mercedeh Movassagh, Chris Trenkov, Nerissa Tunnessen, Tatiyana Apanasovich, Keith A. Crandall, Nathan Edwards, and Anelia Horvath
Characterization of mucoid and serous middle ear effusions from patients with chronic otitis media: implication of different biological mechanisms?, Val Stephanie, Marian Poley, Anna Krueger, Gustavo Nino, Kristy Brown, Marcos Perez-Losada, Heather Gordish-Dressman, and Diego Preciado
Phototransduction gene expression and evolution in cave and surface crayfishes, David B. Stern and Keith A. Crandall
The evolution of gene expression underlying vision loss in cave animals, David B. Stern and Keith A. Crandall
Kisspeptin/GPR54 System: What Do We Know about Its Role in Human Reproduction?, Camila M. Trevisan, Erik Montagna, Renato De Oliveira, Denise M. Christofolini, Caio P. Barbosa, Keith A. Crandall, and Bianca Bianco
Phylogeography reveals unexpectedly low genetic diversity in a widely distributed species: The case of the freshwater crab Aegla platensis (Decapoda: Anomura), Bianca L. Zimmermann, Marcelo S. Crivellaro, Caroline B. Hauschild, Marlise L. Bartholomei-Santos, Keith A. Crandall, Marcos Pérez-Losada, Federico Giri, Pablo Collins, and Sandro Santos
Submissions from 2017
An updated classification of the freshwater crayfishes (Decapoda: Astacidea) of the world, with a complete species list, Keith A. Crandall and Sammy De Grave