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Submissions from 2003

The basic helix-loop-helix differentiation factor Nex1/MATH-2 functions as a key activator of the GAP-43 gene, M. Uittenbogaard, D. L. Martinka, and A. Chiaramello

Sequential interaction of actin-related proteins 2 and 3 (Arp2/3) complex with neural Wiscott-Aldrich syndrome protein (N-WASP) and cortactin during branched actin filament network formation, T. Uruno, J. L. Liu, Y. S. Li, N. Smith, and X. Zhan

Haematopoietic lineage cell-specific protein 1 (HS1) promotes actin-related protein (Arp) 2/3 complex-mediated actin polymerization, T. Uruno, P. J. Zhang, J. L. Liu, J. J. Hao, and X. Zhan

Inhibition of melanoma tumor growth by a novel inhibitor of glucosylceramide synthase, M. Weiss, S. Hettmer, P. Smith, and S. Ladisch

TWEAK, a member of the TNF superfamily, is a multifunctional cytokine that binds the TweakR/Fn14 receptor, S. R. Wiley and J. A. Winkles

Center-similar distributions with applications in multivariate analysis, Z. H. Yang and S. Kotz

Progressive Ankylosis (Ank) protein is expressed by neurons and Ank immunohistochemical reactivity is increased by limbic seizures, M. Yepes, E. Moore, S. A. N. Brown, H. N. Hanscom, and E. P. Smith

DNA damage-induced G(2)/M checkpoint in SV40 large T antigen-immortalized embryonic fibroblast cells requires SHP-2 tyrosine phosphatase, L. P. Yuan, W. M. Yu, and C. K. Qu

The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA, M. Zhou, L. Deng, F. Kashanchi, J.N. Brady, and A.J. Shatkin

The Tat/TAR-dependent phosphorylation of RNA polymerase IIC-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA, M. S. Zhou, L. W. Deng, F. Kashanchi, J. N. Brady, and A. J. Shatkin

Submissions from 2002

Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling., D. Agrawal, T. Chen, R. Irby, J. Quackenbush, and A.F. Chambers

Monitoring of representational difference analysis substrction procedures by global microarrays., T. Andersson, P. Unneberg, P. Nilsson, J. Odeberg, and J. Quackenbush

Identification of antithrombotic substances in common herbs and spices., J.M. Bailey, A.N. Makheja, and J.Y. Vanderhoek

Anti-smallpox drugs and suicide inhibitors of viral polymerases., J.M. Bailey and K. Nelson

Membrane-linked 15-lipoxygenase activation and inhibition of A-beta 42 amyloidogenic peptide formation: possible link to suppression of Alzheimer's disease., J.M. Bailey and J.Y. Vanderhoek

Standards for microarray data., C.A. Ball, G. Sherlock, H. Parkinson, P. Rocca-Sera, and C. Brooksbank

The underlying principles of scientific publication, C.A. Ball, G. Sherlock, H. Parkinson, P. Rocca-Sera, and C. Brooksbank

The homeobox BP1 gene is a repressor of definitive erythroid differentiation, M. Beaudoin, P. Berg, and M. Trudel

Repression of BP1, a homeobox gene, is required for the differentiation of NB4 leukemia cells by ATRA, P. E. Berg and R. T. Awwad

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii., J.M. Carlton, S.V. Angiuoli, B.B. Suh, and T.W. Kooij

BP1, a homeodomain-containing isoform of DLX4, represses the beta-globin gene., M.B. Chase, S. Fu, S.B. Haga, G. Davenport, and H. Stevenson

Gene expression profile of HIV-1 Tat expressing cells: a close interplay between proliferative and differentiation signals., C. de la Fuente, F. Santiago, L. Deng, C. Eadie, and I. Zilberman

HIV-1 Tat interaction with RNA polymerase II C-terminal domain (CTD) and a dynamic association with CDK2 induce CTD phosphorylation and transcription from HIV-1 promoter, L. Deng, T. Ammosova, A. Pumfery, F. Kashanchi, and S. Nekhai

HIV-1 Tat interaction with RNA polymerase II C-terminal domain (CTD) and a dynamic association with CDK2 induce CTD phosphorylation and transcription from HIV-1 promoter., L. Deng, T. Ammosova, A. Pumfery, F. Kashanchi, and S. Nekhai

Transfection of glucosylceramide synthase antisense inhibits mouse melanoma formation., W. Deng, R. Li, M. Guerrera, Y. Liu, and S. Ladisch

Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly., S.C. Fahrenkrug, T.P. Smith, B.A. Freking, J. Cho, and J. White

Citation of randomized evidence in support of guidelines of therapeutic and preventive interventions, I.A. Giannakakis, A.B. Haidich, D.G. Contopoulos-Ioannidis, G.N. Papanikolaou, and M.S. Baltogianni

The search for Bridey Murphy: Implications for modern hypnosis., M.A. Gravitz

3H-thymidine is a defective tool to measure rates of DNA synthesis, V.W. Hu, G.E. Black, A. Torres-Duarte, and F.P. Abramson

Use of RNA and genomic DNA references for inferred comparisons in DNA microarray analyses., H. Kim, B. Zhao, E.C. Snesrud, B.J. Haas, and C.D. Town

Nuclear factor 90 mediates activation of the cellular antiviral expression cascade. [erratum appears in AIDS Research and Human Retroviruses 2002 Aug 10;18(12):897.], I. Krasnoselskaya-Riz, A. Spruill, Y.W. Chen, D. Schuster, and T. Teslovich

Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)., Y. Lee, R. Sultana, G. Pertea, J. Cho, and S. Karamycheva

Identification of Src transformation fingerprint in human colon cancer., R.L. Malek, R.B. Irby, Q.M. Guo, K. Lee, and S. Wong

Thymosin alpha 1 inhibits mammary carcinogenesis in Fisher rats, T.W. Moody, C. Tuthill, M. Badamchian, and A.L. Goldstein

HIV-1 Tat-associated RNA polymerase C-terminal domain kinase, CDK2, phosphorylates CDK7 and stimulates Tat-mediated transcription, S. Nekhai, M. Zhou, A. Fernandez, W. S. Lane, and N. J. Lamb

HIV-1 Tat-associated RNA polymerase C-terminal domain kinase, CDK2, phosphorylates CDK7 and stimulates Tat-mediated transcription., S. Nekhai, M. Zhou, A. Fernandez, W.S. Lane, and N.J. Lamb

AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum., V. Nene, D. Lee, J. Quackenbush, R. Skilton, and S. Mwaura

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs., Y. Okazaki, M. Furuno, T. Kasukawa, and J. Adachi

Effects of 17 alpha-methyltestosterone on uterine morphology and heat shock protein expression are mediated through estrogen and androgen receptors., A.D. Papaconstantinou, T.H. Umbreit, P.L. Goering, and K.M. Brown

gC1QR/p33 expression in human atherosclerotic lesions, E. I. B. Peerschke, A. Bini, T. A. McCaffrey, and B. Ghebrehiwet

Microarray data normalization and transformation., J. Quackenbush

Hypermethylation of HIC-1 and 17p allelic loss in medulloblastoma, B.R. Rood, H.Z. Zhang, D.M. Weitman, and P.H. Cogen

Ganglioside GD1a impedes lipopolysaccharide-induced maturation of human dendritic cells., W. Shen and S. Ladisch

Ganglioside G(D1a) impedes lipopolysaccharide-induced maturation of human dendritic cells, W. P. Shen and S. Ladisch

Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index., T.S. Sonstegard, A.V. Capuco, J. White, C.P. Van Tassell, and E.E. Connor

Genesis: cluster analysis of microarray data., A. Sturn, J. Quackenbush, and Z. Trajanoski

Submissions from 2001

Cell surface tissue transglutaminase is involved in adhesion and migration of monocytic cells on fibronectin., S.S. Akimov and A.M. Belkin

Cell-surface transglutaminase promotes fibronectin assembly via interaction with the gelatin-binding domain of fibronectin: a role in TGFbeta-dependent matrix deposition., S.S. Akimov and A.M. Belkin

AZT-sterol dicarboxylates and sterol-PFA bioesters as novel HIV-provirus inhibitors., J.M. Bailey

Prostaglandins, Leukotrienes and Other Eicosanoids. From Biogenesis to Clinical Application Ed by F. Marks and G. Furstenberger, J.M. Bailey

The two-stage evolution of homochirality: from sugars to protein via RNA., J.M. Bailey

Possible Role of a tetrose-PO4 Cycle in the Origin of Homochirality, J.M. Bailey, C.M. Fedo, and G.A. Walker

Identification of antithrombotic substances in common herbs and spices., J.M. Bailey, A.N. Makheja, and J.Y. Vanderhoek

Matrix-dependent proteolysis of surface transglutaminase by membrane-type metalloproteinase regulates cancer cell adhesion and locomotion., A.M. Belkin, S.S. Akimov, L.S. Zaritskaya, B.I. Ratnikov, and E.I. Deryugina

From controlling elements to transposons: Barbara McClintock and the Nobel Prize, N.C. Comfort

Stable recombinant expression and characterization of the two haemophilic FVIII variants C329S (CRM) and G1948D (CRM)., D. Dezso, E.L. Saenko, I.M. Santos, D.J. Johnson, and E.G. Tuddenham

Inhibition of N-myc expression and induction of apoptosis by iron chelation in human neuroblastoma cells., L. Fan, J. Iyer, S. Zhu, K.K. Frick, and R.K. Wada

BP1 a novel homeobox gene, is frequently expressed in breast cancer., S. Fu

Distinct functions of two isoforms of a homeobox gene, BP1 and DLX7, in the regulation of the beta-globin gene., S. Fu, H. Stevenson, J.W. Strovel, S.B. Haga, and J. Stamberg

BP1, a new homeobox gene, is frequently expressed in acute leukemias., S.B. Haga, S. Fu, J.E. Karp, D.D. Ross, and D.M. Williams

The low density lipoprotein receptor-related protein modulates levels of matrix metalloproteinase 9 (MMP-9) by mediating its cellular catabolism., E. Hahn-Dantona, J.F. Ruiz, P. Bornstein, and D.K. Strickland

The sequence and antiapoptotic functional domains of the human cytomegalovirus UL37 exon 1 immediate early protein are conserved in multiple primary strains., W.A. Hayajneh, A.M. Colberg-Poley, A. Skaletskaya, L.M. Bartle, and M.M. Lesperance

The carboxyl-terminus of the human cytomegalovirus UL37 immediate-early glycoprotein is conserved in primary strains and is important for transactivation., W.A. Hayajneh, D.G. Contopoulos-Ioannidis, M.M. Lesperance, A.M. Venegas, and A.M. Colberg-Poley

Tissue factor pathway inhibitor inhibits endothelial cell proliferation via association with the very low density lipoprotein receptor., T.A. Hembrough, J.F. Ruiz, A.E. Papathanassiu, S.J. Green, and D.K. Strickland

Metabolic radiolabeling: experimental tool or Trojan horse? (35)S-Methionine induces DNA fragmentation and p53-dependent ROS production., V.W. Hu, D.S. Heikka, P.B. Dieffenbach, and L. Ha

Functional annotation of a full-length mouse cDNA collection., J. Kawai, A. Shinagawa, K. Shibata, M. Yoshino, and M. Itoh

Effect of bile acids on the uptake of irinotecan and its active metabolite, SN-38, by intestinal cells., K.S. Kobayashi, S. Ceryak, Y. Matsuzaki, S. Kudoh, and B. Bouscarel

Cell cycle regulation of human interleukin-8 gene expression by the human immunodeficiency virus type 1 Tat protein., R. Mahieux, P.F. Lambert, E. Agbottah, M.A. Halanski, and L. Deng

Low factor VIII recovery in haemophilia A patients without inhibitor titre is not due to the presence of anti-factor VIII antibodies undetectable by the Bethesda assay., W. Mondorf, J. Klinge, N.L. Luban, G. Bray, and E. Saenko

Complete genome sequence of Caulobacter crescentus., W.C. Nierman, T.V. Feldblyum, M.T. Laub, I.T. Paulsen, and K.E. Nelson

Factor VIII C2 domain contains the thrombin-binding site responsible for thrombin-catalyzed cleavage at Arg1689., K. Nogami, K. Hosokawa, M. Nagata, T. Koide, and E.L. Saenko

Circulating factor VIII immune complexes in patients with type 2 acquired hemophilia A and protection from activated protein C-mediated proteolysis., K. Nogami, M. Shima, J.C. Giddings, K. Hosokawa, and M. Nagata

Transcytosis of lipoprotein lipase across cultured endothelial cells requires both heparan sulfate proteoglycans and the very low density lipoprotein receptor., J.C. Obunike, E.P. Lutz, Z. Li, L. Paka, and T. Katopodis

Hemophilia A mutations associated with 1-stage/2-stage activity discrepancy disrupt protein-protein interactions within the triplicated A domains of thrombin-activated factor VIIIa., S.W. Pipe, E.L. Saenko, A.N. Eickhorst, G. Kemball-Cook, and R.J. Kaufman

The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species., J. Quackenbush, J. Cho, D. Lee, F. Liang, and I. Holt

Computational analysis of microarray data., J. Quakenbush

Association of membrane-bound amyloid precursor protein APP with the apolipoprotein E receptor LRP., G.W. Rebeck, R.D. Moir, S. Mui, D.K. Strickland, and R.E. Tanzi

Clinical and pathophysiological correlates of 1064-nm Nd: YAG laser treatment of reticular veins and venulectasias., N.S. Sadick, V.G. Prieto, C.R. Shea, J. Nicholson, and T. McCaffrey

Molecular modifications in factor VIII concentrates produced from plasma pools with elevated levels of coagulation markers using solvent-detergent treatment and pasteurization., E. Saenko, A. Sarafanov, N. Ananyeva, D. Josic, and M. Stadler

Regulation of the ligand binding activity of the human very low density lipoprotein receptor by protein kinase C-dependent phosphorylation., R. Sakthivel, J.C. Zhang, D.K. Strickland, M. Gafvels, and K.R. McCrae

Cell surface heparan sulfate proteoglycans participate in factor VIII catabolism mediated by low density lipoprotein receptor-related protein, A. G. Sarafanov, N. M. Ananyeva, M. Shima, and E. L. Saenko

Cell surface heparan sulfate proteoglycans participate in factor VIII catabolism mediated by low density lipoprotein receptor-related protein., A.G. Sarafanov, N.M. Ananyeva, M. Shima, and E.L. Saenko

In hemophilia A and autoantibody inhibitor patients the factor VIII A2 domain and light chain are most immunogenic., D. Scandella, H. Nakai, F. Matthew, W. Mondorf, and I. Scharrer

Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors, N.A. Shevchuk and M.W. Allard

Human ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes, D. Shi, H. Morizono, X. Yu, L. Tong, and N.M. Allewell

The complement system in sea urchins., L.C. Smith

Identification and characterization of novel tPA- and plasminogen-binding sites within fibrin(ogen) alpha C-domains., G. Tsurupa and L. Medved

A novel TNF receptor family member binds TWEAK and is implicated in angiogenesis., S.R. Wiley, L. Cassiano, T. Lofton, T. Davis-Smith, and J.A. Winkles

Quantification of Benzoic, Phenylacetic, and Phenylbutyric acids from filter-paper blood spots by gas chromatography-mass spectrometry with stable isotope dilution, Y. Xiaolin, M.M. Thompson, D. Shi, and M. Tuchman

Identification of the binding site for fibrinogen recognition peptide gamma 383-395 within the alpha(M)I-domain of integrin alpha(M)beta2., V.P. Yakubenko, D.A. Solovjov, L. Zhang, V.C. Yee, and E.F. Plow

Within the fold: assessing differential expression measures and reproducibility in microarray assays., I.V. Yang, E. Chen, J.P. Hasseman, W. Liang, and B.C. Frank

Rice bioinformatics: analysis of rice sequence data and leveraging the data to other plant species., Q. Yuan, J. Quakenbush, R. Sultana, M. Pertea, and S.L. Salzberg

Submissions from 2000

Helicobacter pylori inhibits gastric cell cycle progression., A. Ahmed, D. Smoot, G. Littleton, R. Tackey, and C.S. Walters

Tissue transglutaminase is an integrin-binding adhesion coreceptor for fibronectin., S.S. Akimov, D. Krylov, L.F. Fleiscman, and A.M. Belkin

The endocytic receptor protein LRP also mediates neuronal calcium signaling via N-methyl-D-aspartate receptors., B.J. Bacskai, M.Q. Xia, D.K. Strickland, G.W. Rebeck, and B.T. Hyman

The Role of RNA and Carbon Dioxide Fixation in the Origin of Homochirality, J.M. Bailey and C.M. Fedo

Thymosin alpha1 is a time and dose-dependent antagonist of dexamethasone-induced apoptosis of murine thymocytes in vitro., C.A. Baumann, M. Badamchian, and A.L. Goldstein

Integrins as receptors for laminins., A.M. Belkin and M.A. Stepp

Deficient iNOS in inflammatory bowel disease intestinal microvascular endothelial cells results in increased leukocyte adhesion., D.G. Binion, P. Rafiee, K.S. Ramanujam, S. Fu, and P.J. Fisher

BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer., D.A. Bochar, L. Wang, H. Beniya, A. Kinev, and Y. Xue