Submissions from 2003
Convergence of RNA cis elements and cellular polyadenylation factors in the regulation of human cytomegalovirus UL37 exon 1 unspliced RNA production, Y. Su, R. Adair, C.N. Davis, N.L. DiFronzo, and A.M. Colberg-Poley
Human cytomegalovirus UL37 immediate early target minigene RNAs are accurately spliced and polyadenylated, Y. Su, J.R. Testaverde, C.N. Davis, W.A. Hayajneh, and R. Adair
Conjugated linoleic acid exhibits stimulatory and inhibitory effects on prostanoid production in human endothelial cells and platelets, A. P. Torres-Duarte and J. Y. Vanderhoek
Modulation of the LDL receptor and LRP levels by HIV protease inhibitors, H. Tran, S. Robinson, I. Mikhailenko, and D. K. Strickland
Severe liver disease in urea cycle disorders, J. D. Traynor, M. Tuchman, M. A. Manning, S. I. Goodman, and G. M. Enns
The basic helix-loop-helix differentiation factor Nex1/MATH-2 functions as a key activator of the GAP-43 gene, M. Uittenbogaard, D. L. Martinka, and A. Chiaramello
Sequential interaction of actin-related proteins 2 and 3 (Arp2/3) complex with neural Wiscott-Aldrich syndrome protein (N-WASP) and cortactin during branched actin filament network formation, T. Uruno, J. L. Liu, Y. S. Li, N. Smith, and X. Zhan
Haematopoietic lineage cell-specific protein 1 (HS1) promotes actin-related protein (Arp) 2/3 complex-mediated actin polymerization, T. Uruno, P. J. Zhang, J. L. Liu, J. J. Hao, and X. Zhan
Inhibition of melanoma tumor growth by a novel inhibitor of glucosylceramide synthase, M. Weiss, S. Hettmer, P. Smith, and S. Ladisch
TWEAK, a member of the TNF superfamily, is a multifunctional cytokine that binds the TweakR/Fn14 receptor, S. R. Wiley and J. A. Winkles
Center-similar distributions with applications in multivariate analysis, Z. H. Yang and S. Kotz
Progressive Ankylosis (Ank) protein is expressed by neurons and Ank immunohistochemical reactivity is increased by limbic seizures, M. Yepes, E. Moore, S. A. N. Brown, H. N. Hanscom, and E. P. Smith
DNA damage-induced G(2)/M checkpoint in SV40 large T antigen-immortalized embryonic fibroblast cells requires SHP-2 tyrosine phosphatase, L. P. Yuan, W. M. Yu, and C. K. Qu
The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA, M. Zhou, L. Deng, F. Kashanchi, J.N. Brady, and A.J. Shatkin
The Tat/TAR-dependent phosphorylation of RNA polymerase IIC-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA, M. S. Zhou, L. W. Deng, F. Kashanchi, J. N. Brady, and A. J. Shatkin
Submissions from 2002
Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling., D. Agrawal, T. Chen, R. Irby, J. Quackenbush, and A.F. Chambers
Monitoring of representational difference analysis substrction procedures by global microarrays., T. Andersson, P. Unneberg, P. Nilsson, J. Odeberg, and J. Quackenbush
Identification of antithrombotic substances in common herbs and spices., J.M. Bailey, A.N. Makheja, and J.Y. Vanderhoek
Anti-smallpox drugs and suicide inhibitors of viral polymerases., J.M. Bailey and K. Nelson
Membrane-linked 15-lipoxygenase activation and inhibition of A-beta 42 amyloidogenic peptide formation: possible link to suppression of Alzheimer's disease., J.M. Bailey and J.Y. Vanderhoek
Standards for microarray data., C.A. Ball, G. Sherlock, H. Parkinson, P. Rocca-Sera, and C. Brooksbank
The underlying principles of scientific publication, C.A. Ball, G. Sherlock, H. Parkinson, P. Rocca-Sera, and C. Brooksbank
The homeobox BP1 gene is a repressor of definitive erythroid differentiation, M. Beaudoin, P. Berg, and M. Trudel
Repression of BP1, a homeobox gene, is required for the differentiation of NB4 leukemia cells by ATRA, P. E. Berg and R. T. Awwad
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii., J.M. Carlton, S.V. Angiuoli, B.B. Suh, and T.W. Kooij
BP1, a homeodomain-containing isoform of DLX4, represses the beta-globin gene., M.B. Chase, S. Fu, S.B. Haga, G. Davenport, and H. Stevenson
Gene expression profile of HIV-1 Tat expressing cells: a close interplay between proliferative and differentiation signals., C. de la Fuente, F. Santiago, L. Deng, C. Eadie, and I. Zilberman
HIV-1 Tat interaction with RNA polymerase II C-terminal domain (CTD) and a dynamic association with CDK2 induce CTD phosphorylation and transcription from HIV-1 promoter, L. Deng, T. Ammosova, A. Pumfery, F. Kashanchi, and S. Nekhai
HIV-1 Tat interaction with RNA polymerase II C-terminal domain (CTD) and a dynamic association with CDK2 induce CTD phosphorylation and transcription from HIV-1 promoter., L. Deng, T. Ammosova, A. Pumfery, F. Kashanchi, and S. Nekhai
Transfection of glucosylceramide synthase antisense inhibits mouse melanoma formation., W. Deng, R. Li, M. Guerrera, Y. Liu, and S. Ladisch
Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly., S.C. Fahrenkrug, T.P. Smith, B.A. Freking, J. Cho, and J. White
Citation of randomized evidence in support of guidelines of therapeutic and preventive interventions, I.A. Giannakakis, A.B. Haidich, D.G. Contopoulos-Ioannidis, G.N. Papanikolaou, and M.S. Baltogianni
The search for Bridey Murphy: Implications for modern hypnosis., M.A. Gravitz
3H-thymidine is a defective tool to measure rates of DNA synthesis, V.W. Hu, G.E. Black, A. Torres-Duarte, and F.P. Abramson
Use of RNA and genomic DNA references for inferred comparisons in DNA microarray analyses., H. Kim, B. Zhao, E.C. Snesrud, B.J. Haas, and C.D. Town
Nuclear factor 90 mediates activation of the cellular antiviral expression cascade. [erratum appears in AIDS Research and Human Retroviruses 2002 Aug 10;18(12):897.], I. Krasnoselskaya-Riz, A. Spruill, Y.W. Chen, D. Schuster, and T. Teslovich
Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)., Y. Lee, R. Sultana, G. Pertea, J. Cho, and S. Karamycheva
Identification of Src transformation fingerprint in human colon cancer., R.L. Malek, R.B. Irby, Q.M. Guo, K. Lee, and S. Wong
Thymosin alpha 1 inhibits mammary carcinogenesis in Fisher rats, T.W. Moody, C. Tuthill, M. Badamchian, and A.L. Goldstein
HIV-1 Tat-associated RNA polymerase C-terminal domain kinase, CDK2, phosphorylates CDK7 and stimulates Tat-mediated transcription, S. Nekhai, M. Zhou, A. Fernandez, W. S. Lane, and N. J. Lamb
HIV-1 Tat-associated RNA polymerase C-terminal domain kinase, CDK2, phosphorylates CDK7 and stimulates Tat-mediated transcription., S. Nekhai, M. Zhou, A. Fernandez, W.S. Lane, and N.J. Lamb
AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum., V. Nene, D. Lee, J. Quackenbush, R. Skilton, and S. Mwaura
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs., Y. Okazaki, M. Furuno, T. Kasukawa, and J. Adachi
Effects of 17 alpha-methyltestosterone on uterine morphology and heat shock protein expression are mediated through estrogen and androgen receptors., A.D. Papaconstantinou, T.H. Umbreit, P.L. Goering, and K.M. Brown
gC1QR/p33 expression in human atherosclerotic lesions, E. I. B. Peerschke, A. Bini, T. A. McCaffrey, and B. Ghebrehiwet
Microarray data normalization and transformation., J. Quackenbush
Hypermethylation of HIC-1 and 17p allelic loss in medulloblastoma, B.R. Rood, H.Z. Zhang, D.M. Weitman, and P.H. Cogen
Ganglioside GD1a impedes lipopolysaccharide-induced maturation of human dendritic cells., W. Shen and S. Ladisch
Ganglioside G(D1a) impedes lipopolysaccharide-induced maturation of human dendritic cells, W. P. Shen and S. Ladisch
Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index., T.S. Sonstegard, A.V. Capuco, J. White, C.P. Van Tassell, and E.E. Connor
Genesis: cluster analysis of microarray data., A. Sturn, J. Quackenbush, and Z. Trajanoski
Submissions from 2001
Cell surface tissue transglutaminase is involved in adhesion and migration of monocytic cells on fibronectin., S.S. Akimov and A.M. Belkin
Cell-surface transglutaminase promotes fibronectin assembly via interaction with the gelatin-binding domain of fibronectin: a role in TGFbeta-dependent matrix deposition., S.S. Akimov and A.M. Belkin
AZT-sterol dicarboxylates and sterol-PFA bioesters as novel HIV-provirus inhibitors., J.M. Bailey
The two-stage evolution of homochirality: from sugars to protein via RNA., J.M. Bailey
Possible Role of a tetrose-PO4 Cycle in the Origin of Homochirality, J.M. Bailey, C.M. Fedo, and G.A. Walker
Identification of antithrombotic substances in common herbs and spices., J.M. Bailey, A.N. Makheja, and J.Y. Vanderhoek
Matrix-dependent proteolysis of surface transglutaminase by membrane-type metalloproteinase regulates cancer cell adhesion and locomotion., A.M. Belkin, S.S. Akimov, L.S. Zaritskaya, B.I. Ratnikov, and E.I. Deryugina
From controlling elements to transposons: Barbara McClintock and the Nobel Prize, N.C. Comfort
Stable recombinant expression and characterization of the two haemophilic FVIII variants C329S (CRM) and G1948D (CRM)., D. Dezso, E.L. Saenko, I.M. Santos, D.J. Johnson, and E.G. Tuddenham
Inhibition of N-myc expression and induction of apoptosis by iron chelation in human neuroblastoma cells., L. Fan, J. Iyer, S. Zhu, K.K. Frick, and R.K. Wada
BP1 a novel homeobox gene, is frequently expressed in breast cancer., S. Fu
Distinct functions of two isoforms of a homeobox gene, BP1 and DLX7, in the regulation of the beta-globin gene., S. Fu, H. Stevenson, J.W. Strovel, S.B. Haga, and J. Stamberg
BP1, a new homeobox gene, is frequently expressed in acute leukemias., S.B. Haga, S. Fu, J.E. Karp, D.D. Ross, and D.M. Williams
The low density lipoprotein receptor-related protein modulates levels of matrix metalloproteinase 9 (MMP-9) by mediating its cellular catabolism., E. Hahn-Dantona, J.F. Ruiz, P. Bornstein, and D.K. Strickland
The sequence and antiapoptotic functional domains of the human cytomegalovirus UL37 exon 1 immediate early protein are conserved in multiple primary strains., W.A. Hayajneh, A.M. Colberg-Poley, A. Skaletskaya, L.M. Bartle, and M.M. Lesperance
The carboxyl-terminus of the human cytomegalovirus UL37 immediate-early glycoprotein is conserved in primary strains and is important for transactivation., W.A. Hayajneh, D.G. Contopoulos-Ioannidis, M.M. Lesperance, A.M. Venegas, and A.M. Colberg-Poley
Tissue factor pathway inhibitor inhibits endothelial cell proliferation via association with the very low density lipoprotein receptor., T.A. Hembrough, J.F. Ruiz, A.E. Papathanassiu, S.J. Green, and D.K. Strickland
Metabolic radiolabeling: experimental tool or Trojan horse? (35)S-Methionine induces DNA fragmentation and p53-dependent ROS production., V.W. Hu, D.S. Heikka, P.B. Dieffenbach, and L. Ha
Functional annotation of a full-length mouse cDNA collection., J. Kawai, A. Shinagawa, K. Shibata, M. Yoshino, and M. Itoh
Effect of bile acids on the uptake of irinotecan and its active metabolite, SN-38, by intestinal cells., K.S. Kobayashi, S. Ceryak, Y. Matsuzaki, S. Kudoh, and B. Bouscarel
Cell cycle regulation of human interleukin-8 gene expression by the human immunodeficiency virus type 1 Tat protein., R. Mahieux, P.F. Lambert, E. Agbottah, M.A. Halanski, and L. Deng
Low factor VIII recovery in haemophilia A patients without inhibitor titre is not due to the presence of anti-factor VIII antibodies undetectable by the Bethesda assay., W. Mondorf, J. Klinge, N.L. Luban, G. Bray, and E. Saenko
Complete genome sequence of Caulobacter crescentus., W.C. Nierman, T.V. Feldblyum, M.T. Laub, I.T. Paulsen, and K.E. Nelson
Factor VIII C2 domain contains the thrombin-binding site responsible for thrombin-catalyzed cleavage at Arg1689., K. Nogami, K. Hosokawa, M. Nagata, T. Koide, and E.L. Saenko
Circulating factor VIII immune complexes in patients with type 2 acquired hemophilia A and protection from activated protein C-mediated proteolysis., K. Nogami, M. Shima, J.C. Giddings, K. Hosokawa, and M. Nagata
Transcytosis of lipoprotein lipase across cultured endothelial cells requires both heparan sulfate proteoglycans and the very low density lipoprotein receptor., J.C. Obunike, E.P. Lutz, Z. Li, L. Paka, and T. Katopodis
Hemophilia A mutations associated with 1-stage/2-stage activity discrepancy disrupt protein-protein interactions within the triplicated A domains of thrombin-activated factor VIIIa., S.W. Pipe, E.L. Saenko, A.N. Eickhorst, G. Kemball-Cook, and R.J. Kaufman
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species., J. Quackenbush, J. Cho, D. Lee, F. Liang, and I. Holt
Computational analysis of microarray data., J. Quakenbush
Association of membrane-bound amyloid precursor protein APP with the apolipoprotein E receptor LRP., G.W. Rebeck, R.D. Moir, S. Mui, D.K. Strickland, and R.E. Tanzi
Clinical and pathophysiological correlates of 1064-nm Nd: YAG laser treatment of reticular veins and venulectasias., N.S. Sadick, V.G. Prieto, C.R. Shea, J. Nicholson, and T. McCaffrey
Molecular modifications in factor VIII concentrates produced from plasma pools with elevated levels of coagulation markers using solvent-detergent treatment and pasteurization., E. Saenko, A. Sarafanov, N. Ananyeva, D. Josic, and M. Stadler
Regulation of the ligand binding activity of the human very low density lipoprotein receptor by protein kinase C-dependent phosphorylation., R. Sakthivel, J.C. Zhang, D.K. Strickland, M. Gafvels, and K.R. McCrae
Cell surface heparan sulfate proteoglycans participate in factor VIII catabolism mediated by low density lipoprotein receptor-related protein, A. G. Sarafanov, N. M. Ananyeva, M. Shima, and E. L. Saenko
Cell surface heparan sulfate proteoglycans participate in factor VIII catabolism mediated by low density lipoprotein receptor-related protein., A.G. Sarafanov, N.M. Ananyeva, M. Shima, and E.L. Saenko
In hemophilia A and autoantibody inhibitor patients the factor VIII A2 domain and light chain are most immunogenic., D. Scandella, H. Nakai, F. Matthew, W. Mondorf, and I. Scharrer
Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors, N.A. Shevchuk and M.W. Allard
Human ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes, D. Shi, H. Morizono, X. Yu, L. Tong, and N.M. Allewell
The complement system in sea urchins., L.C. Smith
Identification and characterization of novel tPA- and plasminogen-binding sites within fibrin(ogen) alpha C-domains., G. Tsurupa and L. Medved
A novel TNF receptor family member binds TWEAK and is implicated in angiogenesis., S.R. Wiley, L. Cassiano, T. Lofton, T. Davis-Smith, and J.A. Winkles
Quantification of Benzoic, Phenylacetic, and Phenylbutyric acids from filter-paper blood spots by gas chromatography-mass spectrometry with stable isotope dilution, Y. Xiaolin, M.M. Thompson, D. Shi, and M. Tuchman
Identification of the binding site for fibrinogen recognition peptide gamma 383-395 within the alpha(M)I-domain of integrin alpha(M)beta2., V.P. Yakubenko, D.A. Solovjov, L. Zhang, V.C. Yee, and E.F. Plow
Within the fold: assessing differential expression measures and reproducibility in microarray assays., I.V. Yang, E. Chen, J.P. Hasseman, W. Liang, and B.C. Frank
Rice bioinformatics: analysis of rice sequence data and leveraging the data to other plant species., Q. Yuan, J. Quakenbush, R. Sultana, M. Pertea, and S.L. Salzberg
Submissions from 2000
Helicobacter pylori inhibits gastric cell cycle progression., A. Ahmed, D. Smoot, G. Littleton, R. Tackey, and C.S. Walters
Tissue transglutaminase is an integrin-binding adhesion coreceptor for fibronectin., S.S. Akimov, D. Krylov, L.F. Fleiscman, and A.M. Belkin
The endocytic receptor protein LRP also mediates neuronal calcium signaling via N-methyl-D-aspartate receptors., B.J. Bacskai, M.Q. Xia, D.K. Strickland, G.W. Rebeck, and B.T. Hyman