Submissions from 2006

Acetaldehyde induces the nuclear to cytoplasmic translocation of Ski/Smad4 complexes and poteasomal degradation of Ski in human hepatic stellate cells, M. Rojkind, Z. Hernandez-Nazara, and M. Amorim

Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts, C. M. Romero, D. DeShazer, T. Feldblyum, J. Ravel, and D. Woods

Respiratory tract mucin genes and mucin glycoproteins in health and disease, M. C. Rose and J. A. Voynow

Thymosin beta 4 sequesters actin in cystic fibrosis sputum and decreases sputum cohesivity in vitro, B. K. Rubin, A. P. Kater, and A. L. Goldstein

Modulation of RANTES expression by HCV core protein in liver derived cell lines, A. Ruggieri, M. Franco, I. Gatto, T. Harada, and T. Miyamura

Probe set algorithms: is there a rational best bet?, J. Seo and E. P. Hoffman

Human cytomegalovirus pUL37xl induces the release of endoplasmic reticulum calcium stores, R. Sharon-Friling, J. Goodhouse, A. M. Colberg-Poley, and T. Shenk

Inhibition of toll-like receptor signaling pathways by exogenous gangliosides, W. P. Shen, A. Jales, K. Stone, D. Leitenberg, and S. Ladisch

Expression, crystallization and preliminary crystallographic studies of a novel bifunctional N-acetylglutamate synthase/kinase from Xanthomonas campestris homologous to vertebrate N-acetylglutamate synthase, D. Shi, L. Caldovic, Z. Jin, X. Yu, and Q. Qu

Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis, D. S. Shi, X. L. Yu, L. Roth, H. Morizono, and M. Tuchman

Evidence for Epithelial-Mesenchymal Transitions in Adult Liver Cells, J. K. Sicklick, S. S. Choi, M. Bustamante, S. J. McCall, and E. Hernandez-Perez

Decreased vhl results in vegf up-regulation in the magnesium deficient rat heart, M. I. Tejero-Taldo, J. J. Chmielinska, and W. B. Weglicki

The nerve-heart connection in the pro-oxidant response to Mg-deficiency, M. I. Tejero-Taldo, J. H. Kramer, I. T. Mak, A. M. Komarov, and W. B. Weglicki

Nuclear Factor 90, a cellular dsRNA binding protein inhibits the HIV Rev-export function, S. Urcuqui-Inchima, M. E. Castano, D. Hernandez-Verdun, G. St-Laurent, and A. Kumar

Surgical treatment of Pott's disease, K. Vaziri, F. Brody, and W. Yu

Lysosomotropic and antioxidant mechanisms of protection by beta blockers, W. B. Weglicki, J. H. Kramer, A. M. Komarov, J. J. Chmielinska, and I. T. Mak

Immunomodulatory effects associated with a live vaccine against Leishmania major containing CpG oligodeoxynucleotides, W. Wu, L. Weigand, Y. Belkaid, and S. Mendez

Clinicopathological significance of homeobox BP1 mRNA expression in lung cancer tissue, Y. S. Xian, C. X. Dang, C. X. Yan, H. P. Li, and S. W. Fu

Dealing with the family: CD147 interactions with cyclophilins, V. Yurchenko, S. Constant, and M. Bukrinsky

Involvement of integrin-linked kinase in carbon tetrachloride-induced hepatic fibrosis in rats, Y. Zhang, T. Ikegami, A. Honda, T. Miyazaki, and B. Bouscarel

Submissions from 2005

Antiviral activity of CYC202 in HIV-1-infected cells, E. Agbottah, C. de la Fuente, S. Nekhai, A. Barnett, and A. Gianella-Borradori

Bypass of senescence, immortalization, and transformation of human hematopoietic progenitor cells, S. S. Akimov, A. Ramezani, T. S. Hawley, and R. G. Hawley

Threshold Amsler grid as a screening tool for asymptomatic patients on hydroxychloroquine therapy, A. Almony, S. Garg, R. K. Peters, R. Mamet, and J. Tsong

RNA interference directed to CDK2 inhibits HIV-1 transcription, T. Ammosova, R. Berro, F. Kashanchi, and S. Nekhai

Nuclear targeting of protein phosphatase-1 by HIV-1 Tat protein, T. Ammosova, M. Jerebtsova, M. Beullens, B. Lesage, and A. Jackson

Chronic ethanol feeding controls the activities of various sialidases by regulating their relative synthetic rates in the rat liver, M. A. Azuine, S. J. Patel, and M. R. Lakshman

Effects of chronic ethanol administration on the activities and relative synthetic rates of myelin and synaptosomal plasma membrane-associated sialidase in the rat brain., M. Azuine, S. Patel, and M.R. Lakshman

Tat gets the "green" light on transcription initiation, J. Brady and F. Kashanchi

List of lists-annotated (LOLA): A database for annotation and comparison of published microarray gene lists, P. Cahan, A. M. Ahmad, H. Burke, S. Fu, and Y. L. Lai

Intestinal and cardiac inflammatory response shows enhanced endotoxin receptor (CD14) expression in magnesium deficiency, J. J. Chmielinska, M. I. Tejero-Taldo, I. T. Mak, and W. B. Weglicki

A STAT5 modifier locus on murine chromosome 7 modulates engraftment of hematopoietic stem cells during steady-state hematopoiesis, C. Couldrey, H. L. Bradley, and K. D. Bunting

MeSHer: Identifying biological concepts in microarray assays based on PubMed references and MeSH terms, A. Djebbari, S. Karamycheva, E. Howe, and J. Quackenbush

Molecular staging for survival prediction of colorectal cancer patients, S. Eschrich, I. Yang, G. Bloom, K. Y. Kwong, and D. Boulware

Comparative analysis of programmed cell death pathways in filamentous fungi., N.D. Fedorova, J.H. Badger, G.D. Robson, J.R. Wortman, and W.C. Nierman

Identification of cancer biomarkers using DNA microarrays., S.W. Fu

Genomic profiling of acquired resistance to apoptosis in cells derived from human atherosclerotic lesions: Potential role of STATs, cyclinD1, BAD, and Bcl-X-L, D. Gagarin, Z. Q. Yang, J. Butler, M. Wimmer, and B. H. Du

Sequencing of Aspergillus nidulans and comparative analysis with A-fumigatus and A-oryzae, J. E. Galagan, S. E. Calvo, C. Cuomo, L. J. Ma, and J. R. Wortman

Parastomal herniation of the gallbladder, R. M. Garcia, F. Brody, J. Miller, and T. A. Ponsky

Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes., M.J. Gardner, R. Bishop, T. Shah, E.P. de Villiers, and J.M. Carlton

Mechanism of action of ethanol in the down-regulation of Gal beta 1, 4GlcNAc alpha 2,6-sialyltransferase messenger RNA in human liver cell lines, M. Garige, M. K. Gong, M. N. Rao, Y. L. Zhang, and M. R. Lakshman

Thymosin β4: actin-sequestering protein moonlights to repair injured tissues., A.L. Goldstein, E. Hannappel, and H.K. Keinman

An overview of lung cancer genomics and proteomics, C. A. Granville and P. A. Dennis

Monocyte-mediated T-cell suppression and augmented monocyte tryptophan catabolism after human hematopoietic stem-cell transplantation, U. Hainz, P. Obexer, C. Winkler, P. Sedlmayr, and O. Takikawa

Correction of murine hemophilia a by hematopoietic stem cell gene therapy, R. G. Hawley, M. Moayeri, and T. S. Hawley

Suppressive effect of ursodeoxycholic acid on type IIA phospholipase A(2) expression in HepG2 cells, T. Ikegami, Y. Matsuzaki, S. Fukushima, J. Shoda, and J. L. Olivier

Hepatic angiomyolipoma and hepatic stellate cells share a similar gene expression profile, R. Kannangai, A. M. Diehl, J. Sicklick, M. Rojkind, and D. Thomas

Transcriptional and post-transcriptional gene regulation of HTLV-1, F. Kashanchi and J. N. Brady

The HTLV-I Tax oncoprotein targets the retinoblastoma protein for proteasomal degradation, K. Kehn, C. de la Fuente, K. Strouss, R. Berro, and H. Jiang

Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies., H.S. Kim, Schell, M., Y. Yu, and R.L. Ulrich

Transcriptional divergence of the duplicated oxidative-stress-responsive genes in the Arabidopsis genome., H.S. Kim, Y. Yu, E.C. Snesrud, L.P. Moy, and L.D. Linford

9-trans, 11-trans-CLA: Antiproliferative and proapoptotic effects on bovine endothelial cells, K. L. Lai, A. P. Torres-Duarte, and J. Y. Vanderhoek

Use of CYP2E1-transfected human liver cell lines in elucidating the actions of ethanol., R. Lakshman, A.I. Cederbaum, J.B. Hoek, M. Konishi, and D. Koop

Independence and reproducibility across microarray platforms, J. E. Larkin, B. C. Frank, H. Gavras, R. Sultana, and J. Quackenbush

Specific molecular features in the organization and biosynthesis of the cell wall of Aspergillus fumigatus., J.P. Latge, I. Mouyna, F. Tekaia, A. Beauvais, and J.P. Debeaupuis

Roles of HIV-1 auxiliary proteins in viral pathogenesis and host-pathogen interactions, L. Li, H. S. Li, C. D. Pauza, M. Bukrinsky, and R. Y. Zhao

Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis, F. L. Liu, T. VanToai, L. P. Moy, G. Bock, and L. D. Linford

Genome sequencing and analysis of Aspergillus oryzae, M. Machida, K. Asai, M. Sano, T. Tanaka, and T. Kumagai

Astrocyte growth effects of vascular endothelial growth factor (VEGF) application to perinatal neocortical explants: Receptor mediation and signal transduction pathways, N. Mani, A. Khaibullina, J. M. Krum, and J. M. Rosenstein

Expression of BP1, a novel homeobox gene, correlates with breast cancer progression and invasion, Y. Man, S.W. Fu, A. Schwartz, J.J. Pinzone, and S.J. Simmens

A subset of in situ breast tumor cell clusters lacks expression of proliferation and progression related markers but shows signs of stromal and vascular invasion, Y. G. Man, T. Shen, J. Weisz, P. E. Berg, and A. M. Schwartz

Rare variants of the gene encoding the potassium chloride co-transporter 3 are associated with bipolar disorder, J. Meyer, K. Johannssen, C. M. Freitag, K. Schraut, and I. Teuber

Taurine inhibits oxidative damage and prevents fibrosis in carbon tetrachloride-induced liver fibrosis., T. Miyazaki, M. Karube, Y. Matsuzaki, T. Ikegami, and M. Doy

What the Aspergillus genomes have told us., W.C. Nierman, G. May, H.S. Kim, M.J. Anderson, and D. Denning

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus., W.C. Nierman, A. Pain, M.J. Anderson, J. Wortman, and H.S. Kim

Plasma leptin concentration increases early during highly active antiretroviral therapy for acquired immunodeficiency syndrome, independent of body weight, J. J. Pinzone, M. L. Fox, M. K. Sastry, D. M. Parenti, and G. L. Simon

G(1)/S transcriptional networks modulated by the HOX11/TLX1 oncogene of T-cell acute lymphoblastic leukemia, I. Riz and R. G. Hawley

Genomics of Aspergillus fumigatus., C.M. Ronning, N.D. Fedorova, P. Bowyer, R. Coulson, and G. Goldman

Trophic effects of vascular endothelial growth factor (VEGF) on perinatal rat spinal cord explants, J. M. Rosenstein and N. Mani

The Aspergillus fumigatus StuA protein governs the up-regulation of a discrete transcriptional program during the acquisition of developmental competence., D.C. Sheppard, L.Y. Chiang, T. Doedt, S.H. Kim, and W.C. Nierman

Specific pharmacological dimerization of KDR in lentivirally transduced human hematopoietic cells activates antiapoptotic and proliferative mechanisms, C. Siatskas, J. Underwood, A. Ramezani, R. G. Hawley, and J. A. Medin

Role for Hedgehog signaling in hepatic stellate cell activation and viability, J. K. Sicklick, Y. X. Li, S. S. Choi, Y. Qi, and W. Chen

Presence of a peptide component of thymosin fraction-5 manifesting discrete cytostatic properties in HL-60 human promyelocytic leukemia cells, B. L. Spangelo, M. Pompilius, D. D. Farrimond, N. Stevens, and R. Nieva

The corneal epithelial stem cell niche, M. A. Stepp and J. D. Zieske

Effects of dietary taurocholate, fat and protein on the storage and metabolism of dietary beta-carotene and alpha-tocopherol in ferrets., P.R. Sundaresan, P. Marmillot, Q.H. Liu, G.V. Mitchell, and E. Grundel

Early response of alpha 2(I) collagen to acetaldehyde in human hepatic stellate cells is TGF-beta independent, G. Svegliati-Baroni, Y. Inagaki, A. R. Rincon-Sanchez, C. Else, and S. Saccomanno

DPSS yellow-green 561-nm lasers for improved fluorochrome detection by flow cytometry, W. Telford, M. Murga, T. Hawley, R. Hawley, and B. Packard

Genome-wide expression analysis of iron regulation in Burkholderia pseudomallei and Burkholderia mallei using DNA microarrays, A. Tuanyok, H. S. Kim, W. C. Nierman, Y. Yu, and J. Dunbar

Small bowel obstruction: Conservative vs. surgical management, S. B. Williams, J. Greenspon, H. A. Young, and B. A. Orkin

Emerging biomarkers: New directions and clinical applications, F. M. Wurst, C. Alling, S. Araclottir, F. Pragst, and J. P. Allen

Aspergillus falvus genomics: gateway to human and animal health, food safety, and crop resistance to diseases., J. Yu, T.E. Cleveland, W.C. Nierman, and J.W. Bennett

Regulation of CD147 cell surface expression - Involvement of the proline residue in the CD147 transmembrane domain, V. Yurchenko, T. Pushkarsky, J. H. Li, W. W. Dai, and B. Sherry

Step-wise specification of retinal stem cells during normal embryogenesis, N. A. Zaghloul, B. Yan, and S. A. Moody

Mutational analysis of the DEAD-box RNA helicase eIF4AII characterizes its interaction with transformation suppressor Pdcd4 and eIF4GI, H. Zakowicz, H. S. Yang, C. Stark, A. Wlodawer, and N. Laronde-Leblanc

Submissions from 2004

Alteration of cellular RNA splicing and polyadenylation machineries during productive human cytomegalovirus infection., R. Adair, G.W. Liebisch, Y. Su, and A.M. Colberg-Poley

Murine FGF-inducible kinase is rapidly degraded via the nuclear ubiquitin-proteosome system when overexpressed in NIH 3T3 cells, G. F. Alberts and J. A. Winkles

Microarray profiling of human atherosclerotic cells during flavopiridol-induced sensitization to apoptosis, M. K. Arora, J. R. Butler, D. Gagarin, and T. A. McCaffrey

Interobserver error involved in independent attempts to measure cusp base areas of Pan M(1)s, S. E. Bailey, V. C. Pilbrow, and B. A. Wood

Hematopoietic-repopulating defects from STAT5-deficient bone marrow are not fully accounted for by loss of thrombopoietin responsiveness, H. L. Bradley, C. Couldrey, and K. D. Bunting

Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and repressor, S. A. Brugmann, P. D. Pandur, K. L. Kenyon, F. Pignoni, and S. A. Moody

A negative role of SHP-2 tyrosine phosphatase in growth factor-dependent hematopoietic cell survival, J. Chen, W. M. Yu, K. D. Bunting, and C. K. Qu

Zidovudine (AZT) treatment promotes upregulation of endotoxin receptor (CD14) in the rat, J. J. Chmielinska, M. I. Tejero-Taldo, I. T. Mak, and W. B. Weglicki

A Middle Jurassic 'sphenosuchian' from China and the origin of the crocodylian skull, J. M. Clark, X. Xu, C. A. Forster, and Y. Wang

Genetic regulation of endotoxin-induced airway disease, D. N. Cook, S. B. Wang, Y. H. Wang, G. P. Howles, and G. S. Whitehead

Regulation of primary spinal neuron lineages after deletion of a major progenitor, B. C. Gallagher and S. A. Moody

Thymosins: chemistry and biological properties in health and disease., A.L. Goldstein and M. Badamchian

Indian Agarwal megalencephalic leukodystrophy with cysts is caused by a common MLC1 mutation, J. R. Gorospe, B. S. Singhal, T. Kainu, F. Wu, and D. Stephan

Safety concerns related to hematopoietic stem cell gene transfer using retroviral vectors, P. Haviernik and K. D. Bunting

Tissue inhibitor of matrix metalloproteinase-1 overexpression in M1 myeloblasts impairs IL-6-induced differentiation, P. Haviernik, C. Lahoda, H. L. Bradley, T. S. Hawley, and A. Ramezani

Proteasomal degradation of Ski is essential for acetaldehyde-dependent up-regulation of alpha 2(I) collagen mRNA in hepatic stellate cells, Z. Hernandez-Nazara, M. Amorim, C. Else, G. Svegliati-Baroni, and P. Greenwel

Mechanisms of HTLV-1 transformation, K. Kehn, R. Berro, C. de la Fuente, K. Strouss, and E. Ghedin