Submissions from 2013
Biphasic regulation of myosin light chain phosphorylation by p21-activated kinase modulates intestinal smooth muscle contractility, Ji Chu, Ngoc T. Pham, Nicole Olate, Karina Kislitsyna, Mary-Claire Day, Phillip A. LeTourneau, Alex Kots, Randolph H. Stewart, Glen A. Laine, Charles S. Cox Jr., and Karen Uray
Clinical and technical factors associated with skin intrinsic fluorescence in subjects with type 1 diabetes from the Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications study, Patricia A. Cleary, Barbara H. Braffett, Trevor J. Orchard, Timothy J. Lyons, John D. Maynard, Catherine C. Cowie, Rose A. Gubitosi-Klug, Jeff F. Way, Karen L. Anderson, Annette Barnie, and Stephan Villavicencio
Metastasis tumor-associated protein 2 enhances metastatic behavior and is associated with poor outcomes in estrogen receptor-negative breast cancer., Kyle R. Covington, Lauren Brusco, Ines Barone, Anna Tsimelzon, Jennifer Selever, Arnoldo Corona-Rodriguez, Powel Brown, Rakesh Kumar, Susan G. Hilsenbeck, and Suzanne A.W. Fuqua
Erratum to: Development and evaluation of a decision aid for BRCA carriers with breast cancer, Julie Culver, Deborah MacDonald, Andrea Thornton, Sharon Sand, Marcia Grant, Deborah Bowen, Harry Burke, Nellie Garcia, Kelly Metcalfe, and Jeffrey Weitzel
Mechanism and consequence of the autoactivation of p38α mitogen-activated protein kinase promoted by TAB1, Gina F. DeNicola, Eva D. Martin, Apirat Chaikuad, Rekha Bassi, James Clark, Luigi Martino, Sharwari Verma, Pierre Sicard, Renee Tata, R. Andrew Atkinson, Stefan Knapp, Maria R. Conte, and Michael S. Marber
MicroRNA-141 regulates BMI1 expression and induces senescence in human diploid fibroblasts, Manjari Dimri, Jeremy D. Carroll, Joon-Ho Cho, and Goberdhan P. Dimri
Proteome-wide analysis of nonsynonymous single-nucleotide variations in active sites of human proteins, Hayley Dingerdissen, Mona Motwani, Konstantinos Karagiannis, Vahan Simonyan, and Raja Mazumder
RNA sequencing of cancer reveals novel splicing alterations, Jeyanthy Eswaran, Anelia Horvath, Sucheta Godbole, Sirigiri Divijendra Natha Reddy, Prakriti Mudvari, Kazufumi Ohshiro, Dinesh Cyanam, Sujit S. Nair, Suzanne A.W. Fuqua, Kornelia Polyak, Liliana D. Florea, and Rakesh Kumar
DNA homologous recombination factor SFR1 physically and functionally interacts with estrogen receptor alpha, Yuxin Feng, David Singleton, Chun Guo, Amanda Gardner, Suresh Pakala, Rakesh Kumar, Elwood Jensen, Jinsong Zhang, and Sohaib Khan
Angiotensin (5-8) modulates nociception at the rat periaqueductal gray via the NO-sGC pathway and an endogenous opioid, L. M. Guethe, A. Pelegrini-da Silva, K. G. Borelli, M. A. Juliano, G. G. Pelosi, J. B. Pesquero, C. Silva, F. M.A. Correa, Ferid Murad, W. A. Prado, and A. R. Martins
A comprehensive, multi-scale dynamical model of ErbB receptor signal transduction in human mammary epithelial cells, Tomas Helikar, Naomi Kochi, Bryan Kowal, Manjari Dimri, Mayumy Naramura, Srikumar M. Raja, Vimla Band, Hamid Band, and Jim A. Rogers
Novel insights into breast cancer genetic variance through RNA sequencing, Anelia Horvath, Suresh B. Pakala, Prakriti Mudvari, Sirigiri Divijendra Natha Reddy, Kazufumi Ohshiro, Sandra Casimiro, Ricardo Pires, Suzanne A.W. Fuqua, Masakazu Toi, Luis Costa, Sujit S. Nair, Saraswati Sukumar, and Rakesh Kumar
A Novel Missense (M206K) STAT3 Mutation in Diffuse Large B Cell Lymphoma Deregulates STAT3 Signaling, Guangzhen Hu, Thomas E. Witzig, and Mamta Gupta
From genes to environment: using integrative genomics to build a "systems-level" understanding of autism spectrum disorders, Valerie Wailin Hu
The Expanding Genomic Landscape of Autism: Discovering the 'Forest' Beyond the 'Trees', Valerie Wailin Hu
Developing a Predictive Gene Classifier for Autism Spectrum Disorders Based upon Differential Gene Expression Profiles of Phenotype Subgroups, Valerie Wailin Hu and Yinglei Lai
Colorimetric detection of senescence-associated β galactosidase, Koji Itahana, Yoko Itahana, and Goberdhan P. Dimri
Acidic nucleoplasmic DNA-binding protein (And-1) controls chromosome congression by regulating the assembly of centromere protein A (CENP-A) at centromeres, Aimee Jaramillo-Lambert, Jing Hao, Haijie Xiao, Yongming Li, Zhiyong Han, and Wenge Zhu
The clinical isolate Pseudomonas aeruginosa MMA83 carries two copies of the blaNDM-1 gene in a novel genetic context., Branco Jovcic, Zorica Lepsanovic, Jelena Begovic, Bojan Rakonjac, Jelena Perovanovic, Ljubisa Topisirovic, and Milan Kojic
SNVDis: A proteome-wide analysis service for evaluating nsSNVs in protein functional sites and pathways, Konstantinos Karagiannis, Vahan Simonyan, and Raja Mazumder
Laminin-111-derived peptides and cancer, Yamato Kikkawa, Kentaro Hozumi, Fumihiko Katagiri, Motoyoshi Nomizu, Hynda K. Kleinman, and Jennifer E. Koblinski
The glucose signaling network in yeast, Jeong-Ho Kim, Adhiraj Roy, David Jouandot, and Kyu Hong Cho
CYP2E1, oxidative stress, post-translational modifications and lipid metabolism, M. Raj Lakshman, Mamatha Garige, Maokai A. Gong, Leslie A. Leckey, Ravi Varatharajalu, Robert S. Redman, Devanshi Seth, Paul S. Haber, Kenneth Hirsch, Richard Amdur, and Ruchi Shah
Structure-based comparative analysis and prediction of N-linked glycosylation sites in evolutionarily distant eukaryotes, Phuc Vinh Nguyen Lam, Radoslav Goldman, Konstantinos Karagiannis, Tejas Narsule, Vahan Simonyan, Valerii Soika, and Raja Mazumder
The MORC family: New epigenetic regulators of transcription and DNA damage response, Da-Qiang Li, Sujit S. Nair, and Rakesh Kumar
Metastasis-associated protein 1 is an integral component of the circadian molecular machinery, Da-Qiang Li, Suresh B. Pakala, Sirigiri Divijendra Natha Reddy, Shaohua Peng, Seetharaman Balasenthil, Chu-Xia Deng, Cheng Chi Lee, Michael A. Rea, and Rakesh Kumar
Mg-supplementation attenuates ritonavir-induced hyperlipidemia, oxidative stress, and cardiac dysfunction in rats, I. Tong Mak, Jay H. Kramer, Xi Chen, Joanna J. Chmielinska, Christopher F. Spurney, and William B. Weglicki
Derailed estrogen signaling and breast cancer: An authentic couple, Bramanandam Manavathi, Oindrilla Dey, Vijay Narsihma Reddy Gajulapalli, Raghavendra Singh Bhatia, Suresh Bugide, and Rakesh Kumar
Identification of novel gene targets and functions of p21-activated kinase 1 during DNA damage by gene expression profiling, Mona Motwani, Da-Qiang Li, Anelia Horvath, and Rakesh Kumar
Extraction of molecular features through exome to transcriptome alignment, Prakriti Mudvari, Kamran Kowsari, Charles Cole, Raja Mazumder, and Anelia Horvath
Genomic insights into triple-negative and HER2-positive breast cancers using isogenic model systems, Prakriti Mudvari, Kazufumi Ohshiro, Vasudha S. Nair, Anelia Horvath, and Rakesh Kumar
A core chromatin remodeling factor instructs global chromatin signaling through multivalent reading of nucleosome codes, Sujit S. Nair, Da-Qiang Li, and Rakesh Kumar
Comparative lipid profiles of milk bank breast milk and infant formulas, Anya Oleynik, Tatiana Eliseeva, and Jack Y. Vanderhoek
MTA1 promotes STAT3 transcription and pulmonary metastasis in breast cancer, Suresh B. Pakala, Suresh K. Rayala, Rui-An Wang, Kazufumi Ohshiro, Prakriti Mudvari, Sirigiri Divijendra Natha Reddy, Yi Zheng, Ricardo Pires, Sandra Casimiro, M. Radhakrishna Pillai, Luis Costa, and Rakesh Kumar
PFI-1, a highly selective protein interaction inhibitor, targeting BET bromodomains., Sarah Picaud, David Da Costa, Angeliki Thanasopoulou, Panagis Filippakopoulos, Paul V. Fish, Martin Philpott, Oleg Fedorov, Paul Brennan, Mark E. Bunnage, Dafydd R. Owen, James E. Bradner, Phillippe Taniere, Brendan O'Sullivan, Susanne Muller, Juerg Schwaller, Tatjana Stankovic, and Stefan Knapp
VBP15: Preclinical characterization of a novel anti-inflammatory delta 9,11 steroid, Erica K.M. Reeves, Eric P. Hoffman, Kanneboyina Nagaraju, Jesse M. Damsker, and John M. McCall
Mth1 regulates the interaction between the Rgt1 repressor and the Ssn6-Tup1 corepressor complex by modulating PKA-dependent phosphorylation of Rgt1, Adhiraj Roy, Yong Jae Shin, Kyu Hong Cho, and Jeong-Ho Kim
Construction of yeast strains useful for screening drugs that inhibit glucose uptake and glycolysis, Adhiraj Roy, Yong Jae Shin, and Jeong-Ho Kim
Differential recruitment of coregulators to the RORA promoter adds another layer of complexity to gene (dys)regulation by sex hormones in autism, Tewarit Sarachana and Valerie Wailin Hu
Genome-wide identification of transcriptional targets of RORA reveals direct regulation of multiple genes associated with autism spectrum disorder, Tewarit Sarachana and Valerie Wailin Hu
Role of microRNAs in Autism Spectrum Disorder, T Sarachana and V W. Hu
TGF-β1 up-regulates the expression of PDGF-β receptor mRNA and induces a delayed PI3K-, AKT-, and p70S6K-dependent proliferative response in activated hepatic stellate cells, Ruchi Shah, Karina Reyes-Gordillo, Jaime Arellanes-Robledo, Carmen G. Lechuga, Zamira Hernandez-Nazara, Adam Cotty, Marcus Rojkind, and M. Raj Lakshman
Evidence for a novel mechanism of the PAK1 interaction with the Rho-GTPases Cdc42 and Rac, Yong Jae Shin, Eun Hye Kim, Adhiraj Roy, and Jeong-Ho Kim
Protein kinase CK2 phosphorylates and activates p21-activated kinase 1, Yong Jae Shin, Yong-Bae Kim, and Jeong-Ho Kim
A novel stratification method in linkage studies to address inter- and intra-family heterogeneity in autism, Zohreh Talebizadeh, Dan E. Arking, and Valerie Wailin Hu
Novel regulatory small RNAs in Streptococcus pyogenes, Rafael A. Tesorero, Ning Yu, Jordan O. Wright, Juan P. Svencionis, Qiang Cheng, Jeong-Ho Kim, and Kyu Hong Cho
Draft genome sequences of Burkholderia cenocepacia ET12 lineage strains K56-2 and BC7, John J. Varga, Liliana Losada, Adrian M. Zelazny, Maria Kim, Jamison McCorrison, Lauren Brinkac, Elizabeth P. Sampaio, David E. Greenberg, Indresh Singh, Cheryl Heiner, Meredith Ashby, William C. Nierman, Steven M. Holland, and Joanna B. Goldberg
Lack of JAK2 activating non-synonymous mutations in diffuse large B-cell tumors: JAK2 deregulation still unexplained, Thomas E. Witzig, Tammy L. Price-Troska, Mary J. Stenson, and Mamta Gupta
A phase I trial of immunostimulatory CpG 7909 oligodeoxynucleotide and 90yttrium ibritumomab tiuxetan radioimmunotherapy for relapsed B-cell non-Hodgkin lymphoma, Thomas E. Witzig, Gregory A. Wiseman, Matthew J. Maurer, Thomas M. Habermann, Ivana N.M. Micallef, Grzegorz S. Nowakowski, Stephen M. Ansell, Joseph P. Colgan, David J. Inwards, Luis F. Porrata, Brian K. Link, Clive S. Zent, Patrick B. Johnston, Tait D. Shanafelt, Cristine Allmer, Yan W. Asmann, Mamta Gupta, Zuhair K. Ballas, Brian J. Smith, and George J. Weiner
ARID4A and ARID4B regulate male fertility, a functional link to the AR and RB pathways, Ray-Chang Wu, Ming Jiang, Arthur L. Beaudet, and Mei-Yi Wu
[Study on in vitro anti-inflammatory activity of total flavonoids from Glycyrrhizae Radix et Rhizoma and its ingredients]., Xiao-Lu Yang, Duo Liu, Ka Bian, and Dan-Dan Zhang
SRC-3 coactivator regulates cell resistance to cytotoxic stress via TRAF4-mediated p53 destabilization, Ping Yi, Weiya Xia, Ray-Chang Wu, David M. Lonard, Mien-Chie Hung, and Bert W. O'Malley
Human cytomegalovirus inhibits apoptosis by proteasome-mediated degradation of bax at endoplasmic reticulum-mitochondrion contacts, Aiping Zhang, Richard L. Hildreth, and Anamaris M. Colberg-Poley
Effects of different extracting fractions from Mori Ramulus and their combinations on inflammatory mediators in macrophage, D. D. Zhang, N. Tang, X. D. Hua, and Ka Bian
Submissions from 2012
Therapeutic management of the hallux rigidus, A Aggarwal, S Kumar, and R. Kumar
t(X;14)(p11;q32) in MALT lymphoma involving GPR34 reveals a role for GPR34 in tumor cell growth, Stephen M. Ansell, Takashi Akasaka, Ellen McPhail, Michelle Manske, Esteban Braggio, Tammy Price-Troska, Steven Ziesmer, Frank Secreto, Rafael Fonseca, Mamta Gupta, Mark Law, Thomas E. Witzig, Martin J.S. Dyer, Ahmet Dogan, James R. Cerhan, and Anne J. Novak
Development of an analytical HPLC methodology to study the effects of thymosin β4 on actin in sputum of cystic fibrosis patients, Mahnaz Badamchian, Ali A. Damavandy, and Allan L. Goldstein
Expression of p14 ARF, p15 INK4b, p16 INK4a and skp2 increases during esophageal squamous cell cancer progression, Peng Bai, Xue Xiao, Juan Zou, Lin Cui, Tri M. Bui-Nguyen, Jinsong Liu, Jianguo Xiao, Bin Chang, Jin Wu, and He Wang
Expression of p14 ARF, p15 INK4b, p16 INK4a and skp2 increases during esophageal squamous cell cancer progression, P Bai, X Xiao, J Zou, L Cui, and TM Bui Nguyen
The Role of MicroRNAs in the Management of Liver Cancer ., Krishna K. Banaudha and Mukesh Verma
NOS-2 signaling and cancer therapy, Ka Bian, Farshid Ghassemi, Alex Sotolongo, Alan Siu, Lauren Shauger, Alex Kots, and Ferid Murad
NOS-2 signaling and cancer therapy, K Bian, F Ghassemi, A Sotolongo, A Siu, and L Shauger
Cryptococcus gattii Comparative Genomics and Transcriptomics: A NIH/NIAID White Paper, V. Chaturvedi and William C. Nierman
Hydrogen peroxide alters splicing of soluble guanylyl cyclase and selectively modulates expression of splicing regulators in human cancer cells, Gilbert J. Cote, Wen Zhu, Anthony Thomas, Emil Martin, Ferid Murad, and Iraida G. Sharina
Hydrogen Peroxide alters splicing of soluble Guanylyl cyclase and selectively modulates expression of splicing regulators in human cancer cells, GJ Cote, W Zhu, A Thomas, E Martin, and F Murad
Transcriptomic landscape of breast cancers through mRNA sequencing, J Eswaran, D Cyanam, P Mudvari, SDN Reddy, and SB Pakala
Transcriptomic landscape of breast cancers through mRNA sequencing, Jeyanthy Eswaran, Dinesh Cyanam, Prakriti Mudvari, Sirigiri Divijendra Natha Reddy, Suresh Pakala, Sujit S. Nair, Liliana Florea, Suzanne A.W. Fuqua, Sucheta Godbole, and Rakesh Kumar
The Global Cancer Genomics Consortium: Interfacing genomics and cancer medicine, Jeyanthy Eswaran, Sudeep Gupta, Amit Dutt, Masakazu Toi, M. Radhakrishna Pillai, Luis Costa, Stefan Knapp, Rajendra Badwe, and Rakesh Kumar
Molecular pathways: targeting p21-activated kinase 1 signaling in cancer--opportunities, challenges, and limitations, Jeyanthy Eswaran, Da-Qiang Li, Anil Shah, and Rakesh Kumar
The Global Cancer Genomics Consortium: Interfacing genomics and cancer medicine, J Eswaran, S Gupta, A Dutt, M Toi, and MR Pillai
Molecular pathways: Targeting p21-activated kinase 1 signaling in cancer - Opportunities, challenges, and limitations, J Eswaran, D. Li, and R Kumar
The bromodomain interaction module, Panagis Filippakopoulos and Stefan Knapp
Histone recognition and large-scale structural analysis of the human bromodomain family, Panagis Filippakopoulos, Sarah Picaud, Maria Mangos, Tracy Keates, Jean-Philippe Lambert, Dalia Barsyte-Lovejoy, Ildiko Felletar, Rudolf Volkmer, Susanne Muller, Tony Pawson, Anne-Claude Gingras, Cheryl H. Arrowsmith, and Stefan Knapp
The bromodomain interaction module, P Knapp, S Filippakopoulos
Histone recognition and large-scale structural analysis of the human bromodomain family, P Filippakopoulos, S Picaud, M Mangos, T Keates, and J. Lambert
Recent advances in biocuration: Meeting report from the Fifth International Biocuration Conference, Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Raja Mazumder, and +17 additional authors
Biocuration virtual issue 2012., Pascale Gaudet and Raja Mazumder
Biocuration virtual issue 2012, P Gaudet and R Mazumder
Thymosin ?4: A multi-functional regenerative peptide. Basic properties and clinical applications, AL Goldstein, E Hannappel, G Sosne, and HK Kleinman
Introduction for thymosins in health and disease, Allan L. Goldstein and Enrico Garaci
Advances in the regenerativeproperties and clinical applications of Thymosin β4, Allan L. Goldstein, Ewald Hannappel, and J. R. Sa-Reed
Thymosin β4: a multi-functional regenerative peptide. Basic properties and clinical applications, Allan L. Goldstein, Ewald Hannappel, Gabriel Sosne, and Hynda K. Kleinman
Elevated serum IL-10 levels in diffuse large B-cell lymphoma: A mechanism of aberrant JAK2 activation, Mamta Gupta, Jing Jing Han, Mary Stenson, Matthew Maurer, Linda Wellik, Guangzhen Hu, Steve Ziesmer, Ahmet Dogan, and Thomas E. Witzig
Expression of Myc, but not pSTAT3, is an adverse prognostic factor for diffuse large B-cell lymphoma treated with epratuzumab/R-CHOP, Mamta Gupta, Matthew J. Maurer, Linda E. Wellik, Mark E. Law, Jing Jing Han, Nazan Ozsan, Ivana N. Micallef, Ahmet Dogan, and Thomas E. Witzig
Dual mTORC1/mTORC2 inhibition diminishes Akt activation and induces Puma-dependent apoptosis in lymphoid malignancies, Mamta Gupta, Andrea E. Wahner Hendrickson, Seong Seok Yun, Jing Jing Han, Paula A. Schneider, Brian D. Koh, Mary J. Stenson, Linda E. Wellik, Jennifer C. Shing, Kevin L. Peterson, Karen S. Flatten, Allan D. Hess, B. Douglas Smith, Judith E. Karp, Sharon Barr, Thomas E. Witzig, and Scott H. Kaufmann
Regulation of STAT3 by histone deacetylase-3 in diffuse large B-cell lymphoma: Implications for therapy, M. Gupta, J. J. Han, M. Stenson, L. Wellik, and T. E. Witzig
Altering the landscape for women in clinical chemistry: Perspectives from multigenerational leaders., Shannon Haymond, Amy K. Saenger, Helen M. Free, Jocelyn M. Hicks, Marilyn A. Huestis, Andrea Rita Horvath, and Corinne R. Fantz
Altering the landscape for women in clinical chemistry: Perspectives from multigenerational leaders, S Haymond, AK Saenger, HM Free, JM Hicks, and MA Huestis
Is retinoic acid-related orphan receptor-alpha (RORA) a target for gene-environment interactions contributing to autism?, Valerie Wailin Hu
Subphenotype-dependent disease markers for diagnosis and personalized treatment of autism spectrum disorders, Valerie Wailin Hu
The value of blood cells in autism research, Valerie Wailin Hu
pRb or its cousins: Who controls the family business?, K Itahana and GP Dimri
pRb or its cousins: who controls the family business?, Koji Itahana and Goberdhan P. Dimri
d-Propranolol protects against oxidative stress and progressive cardiac dysfunction in iron overloaded rats, Jay H. Kramer, Christopher F. Spurney, Micaela Iantorno, Constantine Tziros, Joanna J. Chmielinska, and I. Tong Mak
d-propranolol protects against oxidative stress and progressive cardiac dysfunction in iron overloaded rats, JH Kramer, CF Spurney, M Iantorno, C Tziros, and JJ Chmielinska
High-throughput screening for genes that prevent excess DNA replication in human cells and for molecules that inhibit them, Chrissie Y. Lee, Ronald L. Johnson, Jennifer Wichterman-Kouznetsova, Rajarshi Guha, Marc Ferrer, Pinar Tuzmen, Scott E. Marvin, Wenge Zhu, and Melvin L. DePamphilis
High-throughput screening for genes that prevent excess DNA replication in human cells and for molecules that inhibit them, CY Lee, RL Johnson, J Wichterman-Kouznetsova, R Guha, and M Ferrer
MORC2 signaling integrates phosphorylation-dependent, ATPase-coupled chromatin remodeling during the DNA damage response, Da-Qiang Li, Sujit S. Nair, Kazufumi Ohshiro, Anupam Kumar, Vasudha S. Nair, Suresh B. Pakala, Sirigiri Divijendra Natha Reddy, Rajendra P. Gajula, Jeyanthy Eswaran, L. Aravind, and Rakesh Kumar