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Submissions from 2017

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Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma, Marcos Pérez-Losada, Lamia Alamri, Keith Crandall, and Robert J. Freishtat

Submissions from 2016

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Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology., Sarah K. Hilton, Eduardo Castro-Nallar, Marcos Pérez-Losada, Ian Toma, Timothy A. McCaffrey, Eric P. Hoffman, Marc O. Siegel, Gary L. Simon, W. Evan Johnson, and Keith Crandall

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Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children., Marcos Pérez-Losada, Keith A. Crandall, and Robert J. Freishtat

Submissions from 2015

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Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities., Eduardo Castro-Nallar, Ying Shen, Robert J. Freishtat, Marcos Pérez-Losada, Solaiappan Manimaran, and et al.

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Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma., Marcos Pérez-Losada, Eduardo Castro-Nallar, Matthew L. Bendall, Robert J. Freishtat, and Keith A. Crandall

Submissions from 2014

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Clinical PathoScope: Rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data, Allyson L. Byrd, Joseph F. Perez-Rogers, Solaiappan Manimaran, Eduardo Castro-Nallar, Ian Toma, Timothy A. McCaffrey, Marc O. Siegel, Gary Benson, Keith Crandall, and William Evan Johnson

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Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes, William J. Faison, Alexandre Rostovtsev, Eduardo Castro-Nallar, Keith Crandall, Konstantin Chumakov, Vahan Simonyan, and Raja Mazumder

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Single-molecule long read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia, Ian Toma, Marc O. Siegel, John F. Keiser, Anna Yakovleva, Alvin Kim, Joseph Devaney, Eric P. Hoffman, Rami Alsubail, Keith Crandall, Eduardo Castro-Nallar, Marcos Perez-Losada, Sarah Hilton, Lakhmir S. Chawla, Timothy A. McCaffrey, and Gary L. Simon

Submissions from 2013

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A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda)., Heather D Bracken-Grissom, Maren E Cannon, Patricia Cabezas, Rodney M Feldmann, Carrie E Schweitzer, Shane T Ahyong, Darryl L Felder, Rafael Lemaitre, and Keith A Crandall

Submissions from 2012

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Phylogenetics links monster larva to deep-sea shrimp., Heather D Bracken-Grissom, Darryl L Felder, Nicole L Vollmer, Joel W Martin, and Keith A Crandall

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Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae)., Jesse W Breinholt, Megan L Porter, and Keith A Crandall

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Phylogenetic search through partial tree mixing., Kenneth Sundberg, Mark Clement, Quinn Snell, Dan Ventura, Michael Whiting, and Keith Crandall